LLPS-Cii-0032
Integrated Annotations
▼ OVERVIEW
Status: | Unreviewed |
Protein Name: | Ribosome biogenesis protein BOP1 homolog |
Ensembl Gene: | ENSCING00000006069.3 |
Ensembl Protein: | ENSCINP00000012564.3 |
Organism: | Ciona intestinalis |
Taxa ID: | 7719 |
LLPS Type: | LLPS regulator |
▼ Classification
Condensates:
Condensate | Evidence | Orthologs |
---|---|---|
Chromatin, Nucleolus, P-body, Stress granule, Others | Predicted from orthologs | (View) |
▼ FUNCTION
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. |
▼ CROSS REFERENCE
Database | Nucleotide ID | Protein ID |
---|---|---|
Ensembl | ENSCINT00000012564.3 | ENSCINP00000012564.3 |
Ensembl | ENSCINT00000012588.3 | ENSCINP00000012588.3 |
UniProt | F6YXI8, F6YXI8_CIOIN | |
GeneBank | EAAA01002273 |
▼ SEQUENCE
Protein Sequence (FASTA) |
---|
1 NLRLLHKTTS MKKKRPLSEL QTSILGENEE NLFTNKPIEE EESENEEENE ENAHSVAEES 60 61 ESDYSGLGED EDSDSDDSML GEEDSDVEEG EEVNEKSTEP TQHTEEKKET SEVVAKINEK 120 121 LEKQTEDNDN DTSDEEDSRN TVGNIPMQWY EDFPHIGYDL DGKKIAKPIR NNDELDKFLD 180 181 KMDNPEYWKT IHDKTTGRDH VLTEEELSLV NRVQRGYFYD AKYDPHEPYV DFFTNEKMLH 240 241 PINNAPAHKR SFTPSLVEKR KVGKLVHAIK MGWLKVGKPK QDDEEQIKFY DLWADVNDDK 300 301 KQKMHIPAPK PALPGHEASY NPPPEYLPTQ EEIDQWKEDD PEDRKFDFIP EKHDALRRVP 360 361 QYPKFIQERF ARCLDLYLCP RQRKMKFNVN PDDLIPDLPK PRDLRPFPTV QALCYRGHQA 420 421 MVRTISVDTT GQWLASGSDD GVVRIWEVQT ARCVRELKID EKEAIKCISW CPNTSVCLLA 480 481 ITVVCHIFTD VLLQNLVDTK IIILNPYIGD RLVAQATDSL LQSYEPNEEE EEQSGSKSEK 540 541 SNSLIPPWRS VETGLEYQDG YRLVITHPKA VSKVTWHAKG DYFAATVPNN SNAQVFLHQL 600 601 TKRRSQNPFS KCKGAVQSVL FHPNRPFFFV ATQQYVRVYN LVKQQLSKKL LSNAKWISSI 660 661 AIHPGALYKH TGDNLIVGSY DCRLSWFDMD LSSKPYRTMR YHKRAIRACC FHRKYPLFAS 720 721 AGDDGSIVVS HGMVYSDLMQ NPLIVPVKVL KGHKVDRNLG VLDCCFHPHQ PWIFSSAADN 780 781 TIRLFS 786 |
Nucleotide CDS Sequence (FASTA) |
1 AATCTACGTT TGTTACATAA AACTACAAGT ATGAAGAAAA AGAGACCACT GAGTGAATTA 60 61 CAGACCTCTA TACTGGGAGA GAATGAGGAA AACTTATTCA CAAATAAGCC CATAGAAGAA 120 121 GAAGAGTCAG AGAATGAAGA AGAGAACGAA GAAAATGCCC ACTCAGTGGC AGAAGAGAGC 180 181 GAGAGCGATT ATTCTGGACT TGGTGAGGAT GAGGACTCTG ATTCAGATGA CTCTATGTTG 240 241 GGTGAAGAGG ATAGTGATGT AGAAGAAGGG GAAGAAGTGA ATGAGAAATC AACAGAGCCA 300 301 ACACAACACA CAGAAGAAAA AAAGGAAACA AGCGAAGTTG TGGCAAAAAT AAATGAAAAA 360 361 CTTGAGAAAC AAACTGAAGA TAATGATAAT GACACTTCAG ATGAGGAGGA CAGCAGAAAC 420 421 ACAGTTGGTA ACATACCCAT GCAATGGTAT GAAGACTTTC CTCATATTGG TTATGACTTG 480 481 GATGGGAAAA AGATCGCAAA ACCAATTCGA AATAACGATG AATTGGATAA ATTTCTCGAT 540 541 AAAATGGACA ACCCAGAATA CTGGAAAACG ATCCATGATA AAACAACAGG GAGAGACCAT 600 601 GTTTTAACTG AAGAGGAATT GAGTTTGGTT AACAGAGTAC AACGAGGTTA TTTCTACGAT 660 661 GCTAAATATG ACCCTCATGA ACCATACGTT GACTTTTTCA CCAATGAAAA AATGTTACAC 720 721 CCAATAAATA ACGCCCCTGC TCATAAAAGA AGTTTCACCC CTTCTCTGGT GGAAAAACGA 780 781 AAAGTTGGCA AGCTTGTCCA TGCTATTAAA ATGGGTTGGC TAAAAGTTGG CAAGCCTAAG 840 841 CAAGATGATG AAGAACAAAT CAAGTTCTAT GATTTATGGG CAGATGTGAA TGATGATAAA 900 901 AAACAGAAAA TGCACATTCC TGCACCTAAA CCAGCACTGC CAGGGCATGA AGCATCTTAT 960 961 AACCCACCCC CAGAGTATTT GCCAACTCAA GAAGAGATTG ACCAATGGAA AGAAGACGAC 1020 1021 CCAGAAGACC GGAAGTTTGA TTTCATCCCC GAGAAGCACG ATGCATTGAG AAGAGTTCCT 1080 1081 CAATATCCCA AGTTCATCCA GGAGAGATTC GCCCGATGCC TCGATCTTTA TCTGTGTCCT 1140 1141 CGTCAGAGGA AAATGAAGTT TAACGTGAAC CCTGATGACC TTATCCCTGA CCTCCCTAAA 1200 1201 CCCCGTGACC TTCGACCTTT CCCCACCGTA CAAGCTCTGT GTTACAGGGG TCATCAAGCC 1260 1261 ATGGTCCGTA CTATATCGGT GGATACTACA GGACAATGGT TGGCATCAGG TTCTGACGAT 1320 1321 GGTGTAGTTA GAATATGGGA AGTACAAACA GCTCGTTGTG TGCGTGAACT TAAAATAGAT 1380 1381 GAAAAGGAAG CAATCAAATG TATATCATGG TGTCCTAATA CCAGTGTGTG TCTTCTAGCT 1440 1441 ATCACAGTTG TTTGTCACAT TTTTACTGAT GTTTTACTAC AAAATTTGGT TGACACGAAA 1500 1501 ATTATAATTT TGAACCCCTA CATTGGAGAT CGACTGGTTG CCCAGGCAAC CGACAGCCTC 1560 1561 CTCCAATCAT ATGAGCCAAA TGAGGAGGAA GAGGAGCAGA GTGGGAGCAA GAGTGAGAAG 1620 1621 AGCAATTCCC TCATTCCTCC CTGGAGATCT GTAGAAACAG GATTAGAATA TCAAGATGGG 1680 1681 TACAGGCTTG TTATAACACA TCCAAAAGCA GTATCCAAGG TTACATGGCA TGCCAAGGGC 1740 1741 GATTACTTTG CAGCCACCGT GCCCAACAAT TCCAATGCGC AAGTATTCTT GCACCAACTC 1800 1801 ACTAAAAGAA GGTCTCAGAA TCCCTTCAGT AAATGCAAGG GAGCAGTACA GAGCGTGCTG 1860 1861 TTTCATCCGA ACCGACCTTT CTTCTTTGTG GCAACGCAGC AATACGTACG TGTCTACAAC 1920 1921 TTAGTAAAAC AGCAGCTTTC GAAAAAACTC TTGTCAAACG CAAAATGGAT TTCATCAATT 1980 1981 GCCATTCATC CAGGAGCTCT ATATAAACAC ACAGGTGATA ACTTGATCGT TGGGAGTTAC 2040 2041 GACTGCCGTC TTTCATGGTT TGACATGGAC CTATCTTCCA AGCCATACCG CACAATGCGT 2100 2101 TATCATAAAC GCGCTATACG TGCGTGTTGC TTCCATCGAA AATATCCACT TTTTGCTTCA 2160 2161 GCTGGTGATG ATGGGTCAAT TGTAGTTAGC CATGGGATGG TATACAGTGA TTTAATGCAA 2220 2221 AATCCGCTAA TCGTGCCGGT TAAAGTACTG AAAGGTCACA AAGTAGATCG TAACCTTGGA 2280 2281 GTCCTGGATT GTTGTTTCCA TCCTCACCAA CCATGGATCT TCTCATCCGC AGCAGATAAT 2340 2341 ACGATTCGTC TTTTCTCTTG A 2361 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | Nucleoplasm | |
Cellular Component | PeBoW complex | |
Cellular Component | Preribosome, large subunit precursor | |
Molecular Function | Ribonucleoprotein complex binding | |
Biological Process | Maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | |
Biological Process | Maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
▼ ORTHOLOGY
DrLLPS ID | Organism | Identity | E-value | Score |
---|---|---|---|---|
LLPS-Cis-0212 | Ciona savignyi | 73.55 | 0.0 | 959 |
LLPS-Anc-1155 | Anolis carolinensis | 63.68 | 3e-77 | 254 |
LLPS-Meg-0895 | Meleagris gallopavo | 62.72 | 2e-122 | 377 |
LLPS-Ova-1203 | Ovis aries | 62.4 | 3e-49 | 187 |
LLPS-Leo-0149 | Lepisosteus oculatus | 60.06 | 0.0 | 799 |
LLPS-Lac-0552 | Latimeria chalumnae | 59.45 | 0.0 | 786 |
LLPS-Dar-1279 | Danio rerio | 58.9 | 0.0 | 786 |
LLPS-Scf-0343 | Scleropages formosus | 58.68 | 0.0 | 746 |
LLPS-Orl-2069 | Oryzias latipes | 58.53 | 0.0 | 782 |
LLPS-Ten-1770 | Tetraodon nigroviridis | 58.35 | 0.0 | 775 |
LLPS-Orn-0842 | Oreochromis niloticus | 58.28 | 0.0 | 775 |
LLPS-Pof-0278 | Poecilia formosa | 58.13 | 0.0 | 782 |
LLPS-Gaa-0654 | Gasterosteus aculeatus | 57.91 | 0.0 | 764 |
LLPS-Icp-0200 | Ictalurus punctatus | 57.82 | 0.0 | 779 |
LLPS-Gaga-1391 | Gallus gallus | 57.76 | 0.0 | 770 |
LLPS-Scm-0952 | Scophthalmus maximus | 57.67 | 0.0 | 782 |
LLPS-Xim-2117 | Xiphophorus maculatus | 57.21 | 0.0 | 780 |
LLPS-Chr-0631 | Chlamydomonas reinhardtii | 56.48 | 3e-70 | 252 |
LLPS-Mup-1714 | Mustela putorius furo | 55.98 | 0.0 | 747 |
LLPS-Myl-1836 | Myotis lucifugus | 55.83 | 0.0 | 759 |
LLPS-Ran-0451 | Rattus norvegicus | 55.61 | 0.0 | 754 |
LLPS-Orm-0111 | Oryza meridionalis | 55.41 | 5e-40 | 162 |
LLPS-Aon-2768 | Aotus nancymaae | 55.37 | 0.0 | 746 |
LLPS-Eqc-1593 | Equus caballus | 55.3 | 0.0 | 754 |
LLPS-Bot-0120 | Bos taurus | 55.21 | 0.0 | 754 |
LLPS-Sus-0053 | Sus scrofa | 55.15 | 0.0 | 754 |
LLPS-Pap-3164 | Pan paniscus | 55.06 | 0.0 | 743 |
LLPS-Pat-1537 | Pan troglodytes | 55.06 | 0.0 | 744 |
LLPS-Hos-0069 | Homo sapiens | 55.06 | 0.0 | 744 |
LLPS-Gog-0610 | Gorilla gorilla | 55.06 | 0.0 | 743 |
LLPS-Ict-0001 | Ictidomys tridecemlineatus | 54.91 | 0.0 | 742 |
LLPS-Chs-0111 | Chlorocebus sabaeus | 54.91 | 0.0 | 742 |
LLPS-Mum-0179 | Mus musculus | 54.91 | 0.0 | 753 |
LLPS-Cea-0238 | Cercocebus atys | 54.91 | 0.0 | 742 |
LLPS-Paa-0119 | Papio anubis | 54.91 | 0.0 | 741 |
LLPS-Mal-0376 | Mandrillus leucophaeus | 54.91 | 0.0 | 741 |
LLPS-Cas-0761 | Carlito syrichta | 54.84 | 0.0 | 755 |
LLPS-Mam-0074 | Macaca mulatta | 54.75 | 0.0 | 739 |
LLPS-Maf-1263 | Macaca fascicularis | 54.75 | 0.0 | 739 |
LLPS-Otg-0440 | Otolemur garnettii | 54.6 | 0.0 | 742 |
LLPS-Rhb-0632 | Rhinopithecus bieti | 54.6 | 0.0 | 734 |
LLPS-Mua-0673 | Musa acuminata | 54.45 | 8e-56 | 210 |
LLPS-Cap-1563 | Cavia porcellus | 54.14 | 0.0 | 739 |
LLPS-Mod-1096 | Monodelphis domestica | 54.07 | 0.0 | 736 |
LLPS-Asm-0829 | Astyanax mexicanus | 53.97 | 0.0 | 635 |
LLPS-Fud-0461 | Fukomys damarensis | 53.76 | 0.0 | 738 |
LLPS-Fec-0154 | Felis catus | 53.72 | 0.0 | 748 |
LLPS-Caj-0121 | Callithrix jacchus | 53.57 | 0.0 | 684 |
LLPS-Dio-0091 | Dipodomys ordii | 53.57 | 0.0 | 738 |
LLPS-Zem-0343 | Zea mays | 53.5 | 8e-57 | 212 |
LLPS-Poa-0854 | Pongo abelii | 53.41 | 0.0 | 638 |
LLPS-Sah-0700 | Sarcophilus harrisii | 53.41 | 0.0 | 730 |
LLPS-Mea-0674 | Mesocricetus auratus | 53.21 | 0.0 | 685 |
LLPS-Anp-0830 | Anas platyrhynchos | 52.23 | 0.0 | 619 |
LLPS-Ere-0105 | Erinaceus europaeus | 51.41 | 0.0 | 558 |
LLPS-Caf-1400 | Canis familiaris | 51.23 | 0.0 | 682 |
LLPS-Fia-0687 | Ficedula albicollis | 49.42 | 0.0 | 574 |
LLPS-Chc-0335 | Chondrus crispus | 48.0 | 4e-60 | 222 |
LLPS-Drm-1112 | Drosophila melanogaster | 46.95 | 0.0 | 641 |
LLPS-Man-1924 | Macaca nemestrina | 45.87 | 0.0 | 570 |
LLPS-Abg-0018 | Absidia glauca | 45.78 | 0.0 | 594 |
LLPS-Sem-0312 | Selaginella moellendorffii | 45.62 | 0.0 | 556 |
LLPS-Php-0531 | Physcomitrella patens | 45.47 | 0.0 | 556 |
LLPS-Tum-0151 | Tuber melanosporum | 45.45 | 0.0 | 568 |
LLPS-Ors-0325 | Oryza sativa | 45.16 | 2e-178 | 535 |
LLPS-Org-0684 | Oryza glaberrima | 45.16 | 2e-178 | 535 |
LLPS-Ori-0781 | Oryza indica | 45.16 | 2e-178 | 535 |
LLPS-Brd-0265 | Brachypodium distachyon | 45.16 | 3e-178 | 535 |
LLPS-Orbr-0536 | Oryza brachyantha | 44.85 | 0.0 | 542 |
LLPS-Sei-0740 | Setaria italica | 44.85 | 5e-179 | 537 |
LLPS-Hov-0349 | Hordeum vulgare | 44.79 | 3e-178 | 535 |
LLPS-Sob-0165 | Sorghum bicolor | 44.7 | 2e-175 | 528 |
LLPS-Mel-0776 | Melampsora laricipopulina | 44.6 | 0.0 | 546 |
LLPS-Tra-1278 | Triticum aestivum | 44.55 | 1e-175 | 529 |
LLPS-Pot-0036 | Populus trichocarpa | 44.46 | 4e-176 | 531 |
LLPS-Sot-0126 | Solanum tuberosum | 44.15 | 3e-171 | 519 |
LLPS-Pug-0237 | Puccinia graminis | 43.9 | 3e-180 | 546 |
LLPS-Brn-0026 | Brassica napus | 43.87 | 4e-164 | 501 |
LLPS-Gor-0235 | Gossypium raimondii | 43.85 | 2e-171 | 517 |
LLPS-Prp-0217 | Prunus persica | 43.78 | 3e-166 | 504 |
LLPS-Thc-0467 | Theobroma cacao | 43.69 | 9e-173 | 521 |
LLPS-Pyt-0617 | Pyrenophora teres | 43.69 | 2e-171 | 521 |
LLPS-Brr-0744 | Brassica rapa | 43.56 | 3e-160 | 505 |
LLPS-Bro-0109 | Brassica oleracea | 43.56 | 1e-164 | 501 |
LLPS-Pytr-0955 | Pyrenophora triticirepentis | 43.54 | 1e-170 | 519 |
LLPS-Lem-0485 | Leptosphaeria maculans | 43.54 | 9e-170 | 517 |
LLPS-Orgl-0224 | Oryza glumaepatula | 43.47 | 4e-164 | 498 |
LLPS-Crn-0111 | Cryptococcus neoformans | 43.45 | 0.0 | 558 |
LLPS-Art-0057 | Arabidopsis thaliana | 43.32 | 2e-169 | 514 |
LLPS-Arl-0080 | Arabidopsis lyrata | 43.32 | 2e-167 | 509 |
LLPS-Trr-0313 | Trichoderma reesei | 43.29 | 2e-175 | 529 |
LLPS-Nec-0126 | Neurospora crassa | 43.25 | 1e-172 | 524 |
LLPS-Phv-0738 | Phaseolus vulgaris | 43.23 | 3e-165 | 503 |
LLPS-Put-0186 | Puccinia triticina | 43.17 | 5e-172 | 528 |
LLPS-Hea-1086 | Helianthus annuus | 43.16 | 2e-166 | 506 |
LLPS-Trv-0732 | Trichoderma virens | 43.1 | 0.0 | 545 |
LLPS-Cus-0583 | Cucumis sativus | 43.08 | 2e-160 | 488 |
LLPS-Orni-0787 | Oryza nivara | 43.03 | 3e-159 | 485 |
LLPS-Mae-1859 | Manihot esculenta | 43.01 | 3e-170 | 515 |
LLPS-Coc-0078 | Corchorus capsularis | 43.01 | 1e-160 | 489 |
LLPS-Mao-0593 | Magnaporthe oryzae | 42.88 | 2e-174 | 529 |
LLPS-Glm-0770 | Glycine max | 42.77 | 6e-163 | 497 |
LLPS-Blg-0509 | Blumeria graminis | 42.75 | 8e-180 | 541 |
LLPS-Miv-0001 | Microbotryum violaceum | 42.71 | 2e-163 | 521 |
LLPS-Sac-0288 | Saccharomyces cerevisiae | 42.71 | 6e-173 | 525 |
LLPS-Asfu-0131 | Aspergillus fumigatus | 42.62 | 2e-173 | 526 |
LLPS-Sol-0658 | Solanum lycopersicum | 42.62 | 7e-152 | 478 |
LLPS-Via-0498 | Vigna angularis | 42.49 | 5e-147 | 455 |
LLPS-Kop-0478 | Komagataella pastoris | 42.47 | 3e-170 | 519 |
LLPS-Fuo-0194 | Fusarium oxysporum | 42.33 | 2e-173 | 525 |
LLPS-Fuv-0322 | Fusarium verticillioides | 42.33 | 3e-173 | 525 |
LLPS-Nef-0675 | Neosartorya fischeri | 42.31 | 3e-171 | 520 |
LLPS-Asn-0438 | Aspergillus nidulans | 42.31 | 7e-175 | 530 |
LLPS-Asg-0504 | Ashbya gossypii | 42.27 | 3e-178 | 540 |
LLPS-Orr-1407 | Oryza rufipogon | 42.24 | 6e-162 | 492 |
LLPS-Orb-0118 | Oryza barthii | 42.24 | 2e-161 | 490 |
LLPS-Ved-0798 | Verticillium dahliae | 42.2 | 1e-170 | 518 |
LLPS-Cae-0298 | Caenorhabditis elegans | 42.1 | 3e-175 | 527 |
LLPS-Orp-0527 | Oryza punctata | 42.09 | 7e-161 | 489 |
LLPS-Viv-0377 | Vitis vinifera | 42.06 | 1e-148 | 459 |
LLPS-Usm-0734 | Ustilago maydis | 42.05 | 9e-165 | 508 |
LLPS-Fus-0370 | Fusarium solani | 41.96 | 1e-172 | 523 |
LLPS-Tru-0248 | Triticum urartu | 41.84 | 2e-143 | 447 |
LLPS-Gag-0637 | Gaeumannomyces graminis | 41.81 | 7e-175 | 529 |
LLPS-Ast-0088 | Aspergillus terreus | 41.77 | 4e-176 | 533 |
LLPS-Spr-0071 | Sporisorium reilianum | 41.77 | 4e-164 | 506 |
LLPS-Beb-0697 | Beauveria bassiana | 41.72 | 1e-172 | 523 |
LLPS-Coo-0071 | Colletotrichum orbiculare | 41.72 | 1e-170 | 518 |
LLPS-Cogr-0529 | Colletotrichum graminicola | 41.65 | 1e-166 | 508 |
LLPS-Vir-0528 | Vigna radiata | 41.44 | 2e-158 | 484 |
LLPS-Asc-0072 | Aspergillus clavatus | 41.4 | 3e-174 | 528 |
LLPS-Dac-0380 | Daucus carota | 41.3 | 1e-162 | 497 |
LLPS-Asni-0041 | Aspergillus niger | 41.25 | 8e-174 | 527 |
LLPS-Dos-0025 | Dothistroma septosporum | 41.24 | 2e-165 | 503 |
LLPS-Yal-0071 | Yarrowia lipolytica | 41.13 | 5e-174 | 529 |
LLPS-Asf-0344 | Aspergillus flavus | 41.1 | 5e-174 | 527 |
LLPS-Aso-0573 | Aspergillus oryzae | 41.1 | 5e-174 | 528 |
LLPS-Gas-0003 | Galdieria sulphuraria | 40.97 | 9e-53 | 199 |
LLPS-Map-0215 | Magnaporthe poae | 40.89 | 1e-170 | 518 |
LLPS-Scj-0366 | Schizosaccharomyces japonicus | 40.72 | 3e-163 | 498 |
LLPS-Nia-0748 | Nicotiana attenuata | 40.44 | 2e-97 | 321 |
LLPS-Lep-0058 | Leersia perrieri | 40.25 | 7e-151 | 463 |
LLPS-Scc-1080 | Schizosaccharomyces cryophilus | 40.06 | 5e-144 | 448 |
LLPS-Phn-0348 | Phaeosphaeria nodorum | 39.75 | 1e-150 | 466 |
LLPS-Met-0563 | Medicago truncatula | 39.4 | 5e-155 | 478 |
LLPS-Zyt-0834 | Zymoseptoria tritici | 39.21 | 7e-157 | 480 |
LLPS-Scp-0316 | Schizosaccharomyces pombe | 39.01 | 6e-153 | 471 |
LLPS-Cog-0045 | Colletotrichum gloeosporioides | 38.34 | 3e-138 | 432 |
LLPS-Amt-0110 | Amborella trichopoda | 37.94 | 4e-91 | 303 |
LLPS-Cym-0218 | Cyanidioschyzon merolae | 36.07 | 3e-128 | 405 |
LLPS-Osl-0417 | Ostreococcus lucimarinus | 28.64 | 5e-84 | 285 |