LLPS-Brn-2321
BnaCnng17010D
Integrated Annotations
▼ OVERVIEW
Status: | Unreviewed |
Protein Name: | Serine hydroxymethyltransferase |
Gene Name: | BnaCnng17010D, GSBRNA2T00092583001 |
Ensembl Gene: | GSBRNA2T00103180001 |
Ensembl Protein: | CDX72795 |
Organism: | Brassica napus |
Taxa ID: | 3708 |
LLPS Type: | Others |
▼ Classification
Condensates:
Condensate | Evidence | Orthologs |
---|---|---|
Nucleolus | Predicted from orthologs | (View) |
▼ FUNCTION
Interconversion of serine and glycine. |
▼ CROSS REFERENCE
Database | Nucleotide ID | Protein ID |
---|---|---|
Ensembl | CDX72795 | CDX72795 |
UniProt | A0A078IGW6, A0A078IGW6_BRANA | |
GeneBank | LK032818 | CDY49212.1 |
RefSeq | XM_013842453.1 | XP_013697907.1 |
▼ SEQUENCE
Protein Sequence (FASTA) |
---|
1 MALALRRLSS SLKKPIFSNG VSLRSMSSLP TSAMADSERS RSSWIKQLNA PLEEIDPEIA 60 61 DIIELEKARQ WKGFELIPSE NFTSASVMEA VGSVMTNKYS EGYPGARYYG GNEYIDMAES 120 121 LCQKRALEAF HLDPSKWGVN VQSLSGSPAN FQVYTALLKP HERIMALDLP HGGHLSHGYQ 180 181 TDTKKISAVS IFFETMPYRL DESTGYIDYD QLEKSAVLFR PKLIVAGASA YARLYDYARI 240 241 RKVCDKQKAV MLADMAHISG LVAAGVIPSP FEYADVVTTT THKSLRGPRG AMIFFRKGLK 300 301 EVNKQGKEVM YDYEDRINAA VFPGLQGGPH NHTITGLAVA LKQVKSPEYK AYQDQVLRNC 360 361 SKFAEVRCLS KLVDIPQVSC HTLLSKGYDL VSGGTDNHLV LVNLKNKGID GSRVEKVLES 420 421 VHIAANKNTV PGDVSAMVPG GIRMGTPALT SRGFIEEDFA KVAEYFDLAV KIALKIKAES 480 481 QGTKLKDFVA TMQSNEKLQS EMAKLREMIE EYAKQFPTIG FEKETMRYKE 530 |
Nucleotide CDS Sequence (FASTA) |
1 ATGGCGTTGG CTCTTCGCAG ACTATCATCT TCCCTTAAGA AGCCCATCTT CTCAAATGGC 60 61 GTTTCCCTCC GTTCCATGTC GTCTTTGCCA ACCTCGGCTA TGGCGGACTC GGAGAGATCT 120 121 CGTTCCAGTT GGATAAAGCA ACTGAATGCA CCTCTGGAAG AAATCGATCC AGAAATCGCA 180 181 GATATTATCG AACTCGAGAA GGCTCGTCAA TGGAAGGGAT TTGAACTTAT ACCGTCGGAG 240 241 AATTTCACAT CTGCCTCGGT GATGGAAGCT GTTGGCTCTG TTATGACTAA CAAGTATAGT 300 301 GAAGGCTACC CTGGAGCTAG ATACTATGGA GGCAATGAGT ACATTGACAT GGCTGAGTCA 360 361 TTATGTCAAA AACGCGCCCT CGAAGCTTTT CACTTAGATC CTTCCAAATG GGGAGTCAAT 420 421 GTGCAGTCTT TATCAGGATC ACCAGCTAAC TTCCAAGTTT ACACCGCGCT ACTTAAACCT 480 481 CATGAAAGAA TCATGGCTCT TGACTTACCT CATGGTGGCC ATCTTTCTCA TGGTTATCAG 540 541 ACTGACACAA AGAAAATATC TGCTGTATCC ATCTTCTTTG AGACAATGCC ATACAGATTA 600 601 GATGAGAGCA CTGGTTACAT TGATTACGAT CAGCTAGAAA AAAGTGCGGT GCTTTTCAGA 660 661 CCCAAACTTA TTGTTGCGGG TGCAAGTGCT TATGCTCGTT TATATGACTA TGCACGTATC 720 721 CGTAAGGTCT GTGACAAGCA AAAGGCGGTT ATGCTGGCAG ATATGGCTCA CATTAGTGGG 780 781 TTGGTTGCGG CTGGTGTTAT TCCTTCTCCT TTTGAGTATG CTGATGTTGT TACGACTACA 840 841 ACTCACAAAT CTCTTCGAGG TCCCAGAGGG GCTATGATAT TCTTTAGGAA GGGATTGAAA 900 901 GAGGTTAACA AACAAGGAAA AGAGGTCATG TATGACTATG AGGACAGAAT CAATGCAGCT 960 961 GTTTTTCCTG GACTGCAAGG TGGTCCACAT AATCATACTA TAACAGGTCT AGCAGTTGCT 1020 1021 CTGAAGCAGG TGAAATCACC AGAGTATAAG GCTTATCAGG ATCAAGTTCT CCGCAATTGC 1080 1081 TCAAAGTTTG CTGAGGTGAG ATGTTTGAGT AAATTAGTTG ATATACCTCA AGTATCCTGC 1140 1141 CATACTTTGC TATCAAAAGG ATATGACTTA GTATCTGGAG GCACTGACAA TCATTTAGTC 1200 1201 TTGGTGAACT TGAAAAATAA GGGAATAGAT GGATCAAGAG TGGAAAAAGT ATTAGAATCA 1260 1261 GTACATATTG CAGCAAACAA GAACACTGTT CCTGGTGATG TTTCCGCCAT GGTTCCAGGC 1320 1321 GGCATCCGTA TGGGAACACC AGCTCTCACA TCAAGAGGAT TCATTGAAGA AGATTTTGCA 1380 1381 AAAGTGGCTG AATACTTTGA TTTAGCCGTC AAGATAGCCT TGAAGATCAA GGCAGAGTCT 1440 1441 CAAGGAACAA AGCTGAAGGA CTTTGTAGCA ACGATGCAAT CAAATGAGAA GTTACAGTCA 1500 1501 GAGATGGCAA AGCTTCGTGA GATGATTGAA GAATACGCTA AACAGTTCCC AACGATTGGG 1560 1561 TTCGAGAAAG AGACAATGCG ATACAAAGAG TAG 1593 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Molecular Function | Glycine hydroxymethyltransferase activity | |
Molecular Function | Pyridoxal phosphate binding | |
Biological Process | Glycine biosynthetic process from serine | |
Biological Process | Tetrahydrofolate interconversion |
▼ ORTHOLOGY
DrLLPS ID | Organism | Identity | E-value | Score |
---|---|---|---|---|
LLPS-Bro-2722 | Brassica oleracea | 96.33 | 0.0 | 991 |
LLPS-Brr-1379 | Brassica rapa | 93.95 | 0.0 | 969 |
LLPS-Art-1809 | Arabidopsis thaliana | 91.75 | 0.0 | 959 |
LLPS-Arl-2453 | Arabidopsis lyrata | 91.75 | 0.0 | 953 |
LLPS-Nia-2398 | Nicotiana attenuata | 84.36 | 0.0 | 869 |
LLPS-Thc-0212 | Theobroma cacao | 84.33 | 0.0 | 863 |
LLPS-Viv-0937 | Vitis vinifera | 84.17 | 0.0 | 876 |
LLPS-Coc-1068 | Corchorus capsularis | 84.14 | 0.0 | 847 |
LLPS-Gor-0776 | Gossypium raimondii | 83.95 | 0.0 | 855 |
LLPS-Cus-1961 | Cucumis sativus | 83.95 | 0.0 | 866 |
LLPS-Pot-1901 | Populus trichocarpa | 83.73 | 0.0 | 855 |
LLPS-Dac-0425 | Daucus carota | 83.56 | 0.0 | 861 |
LLPS-Hea-2602 | Helianthus annuus | 83.56 | 0.0 | 852 |
LLPS-Prp-1906 | Prunus persica | 83.46 | 0.0 | 875 |
LLPS-Mae-1119 | Manihot esculenta | 83.14 | 0.0 | 859 |
LLPS-Mua-2113 | Musa acuminata | 83.1 | 0.0 | 849 |
LLPS-Sot-0061 | Solanum tuberosum | 83.01 | 0.0 | 861 |
LLPS-Met-0857 | Medicago truncatula | 82.98 | 0.0 | 859 |
LLPS-Phv-0465 | Phaseolus vulgaris | 82.63 | 0.0 | 846 |
LLPS-Sol-0670 | Solanum lycopersicum | 82.24 | 0.0 | 857 |
LLPS-Glm-2860 | Glycine max | 81.98 | 0.0 | 842 |
LLPS-Via-0418 | Vigna angularis | 79.44 | 0.0 | 845 |
LLPS-Sem-0783 | Selaginella moellendorffii | 78.05 | 0.0 | 783 |
LLPS-Php-0058 | Physcomitrella patens | 75.98 | 0.0 | 787 |
LLPS-Tru-1178 | Triticum urartu | 75.1 | 0.0 | 732 |
LLPS-Osl-0955 | Ostreococcus lucimarinus | 70.47 | 0.0 | 678 |
LLPS-Chr-1685 | Chlamydomonas reinhardtii | 68.28 | 0.0 | 675 |
LLPS-Orm-0355 | Oryza meridionalis | 67.85 | 0.0 | 638 |
LLPS-Abg-1072 | Absidia glauca | 65.5 | 0.0 | 585 |
LLPS-Pyt-1337 | Pyrenophora teres | 65.02 | 0.0 | 552 |
LLPS-Trv-0734 | Trichoderma virens | 62.55 | 0.0 | 577 |
LLPS-Fus-0988 | Fusarium solani | 62.34 | 0.0 | 590 |
LLPS-Fuo-1485 | Fusarium oxysporum | 62.34 | 0.0 | 589 |
LLPS-Fuv-0779 | Fusarium verticillioides | 62.34 | 0.0 | 588 |
LLPS-Blg-1491 | Blumeria graminis | 62.17 | 0.0 | 549 |
LLPS-Ast-1349 | Aspergillus terreus | 62.06 | 0.0 | 564 |
LLPS-Caf-0064 | Canis familiaris | 61.94 | 0.0 | 551 |
LLPS-Coo-1539 | Colletotrichum orbiculare | 61.82 | 0.0 | 585 |
LLPS-Asni-0523 | Aspergillus niger | 61.74 | 0.0 | 573 |
LLPS-Mao-1124 | Magnaporthe oryzae | 61.69 | 0.0 | 578 |
LLPS-Cog-1376 | Colletotrichum gloeosporioides | 61.61 | 0.0 | 579 |
LLPS-Zyt-0219 | Zymoseptoria tritici | 61.51 | 0.0 | 567 |
LLPS-Trr-0783 | Trichoderma reesei | 61.31 | 0.0 | 570 |
LLPS-Beb-0930 | Beauveria bassiana | 61.26 | 0.0 | 577 |
LLPS-Cogr-1322 | Colletotrichum graminicola | 61.17 | 0.0 | 582 |
LLPS-Scp-1241 | Schizosaccharomyces pombe | 61.15 | 0.0 | 572 |
LLPS-Kop-1003 | Komagataella pastoris | 61.01 | 0.0 | 585 |
LLPS-Leo-0252 | Lepisosteus oculatus | 60.96 | 0.0 | 584 |
LLPS-Gaa-1164 | Gasterosteus aculeatus | 60.88 | 0.0 | 578 |
LLPS-Asn-1265 | Aspergillus nidulans | 60.87 | 0.0 | 574 |
LLPS-Aso-1178 | Aspergillus oryzae | 60.87 | 0.0 | 565 |
LLPS-Asf-0455 | Aspergillus flavus | 60.87 | 0.0 | 564 |
LLPS-Orn-2875 | Oreochromis niloticus | 60.86 | 0.0 | 566 |
LLPS-Scm-2054 | Scophthalmus maximus | 60.66 | 0.0 | 579 |
LLPS-Xim-1691 | Xiphophorus maculatus | 60.66 | 0.0 | 578 |
LLPS-Dos-0925 | Dothistroma septosporum | 60.48 | 0.0 | 558 |
LLPS-Lem-1072 | Leptosphaeria maculans | 60.48 | 0.0 | 565 |
LLPS-Pof-2570 | Poecilia formosa | 60.44 | 0.0 | 580 |
LLPS-Nef-0921 | Neosartorya fischeri | 60.43 | 0.0 | 564 |
LLPS-Phn-1551 | Phaeosphaeria nodorum | 60.43 | 0.0 | 556 |
LLPS-Asfu-1415 | Aspergillus fumigatus | 60.43 | 0.0 | 567 |
LLPS-Lac-1839 | Latimeria chalumnae | 60.39 | 0.0 | 589 |
LLPS-Nec-0140 | Neurospora crassa | 60.39 | 0.0 | 587 |
LLPS-Myl-2997 | Myotis lucifugus | 60.26 | 0.0 | 579 |
LLPS-Ten-0914 | Tetraodon nigroviridis | 60.22 | 0.0 | 575 |
LLPS-Vir-0976 | Vigna radiata | 60.22 | 0.0 | 558 |
LLPS-Loa-0219 | Loxodonta africana | 60.04 | 0.0 | 579 |
LLPS-Dio-3021 | Dipodomys ordii | 60.04 | 0.0 | 581 |
LLPS-Cym-0095 | Cyanidioschyzon merolae | 59.96 | 0.0 | 579 |
LLPS-Pat-0610 | Pan troglodytes | 59.83 | 0.0 | 575 |
LLPS-Pap-3850 | Pan paniscus | 59.83 | 0.0 | 575 |
LLPS-Rhb-2692 | Rhinopithecus bieti | 59.83 | 0.0 | 577 |
LLPS-Eqc-3485 | Equus caballus | 59.83 | 0.0 | 577 |
LLPS-Anc-2771 | Anolis carolinensis | 59.83 | 0.0 | 577 |
LLPS-Aon-2076 | Aotus nancymaae | 59.83 | 0.0 | 575 |
LLPS-Caj-4755 | Callithrix jacchus | 59.83 | 0.0 | 573 |
LLPS-Gog-2559 | Gorilla gorilla | 59.83 | 0.0 | 576 |
LLPS-Bot-2589 | Bos taurus | 59.74 | 0.0 | 577 |
LLPS-Xet-3438 | Xenopus tropicalis | 59.69 | 0.0 | 575 |
LLPS-Scc-1511 | Schizosaccharomyces cryophilus | 59.65 | 0.0 | 556 |
LLPS-Man-4703 | Macaca nemestrina | 59.61 | 0.0 | 575 |
LLPS-Fec-3953 | Felis catus | 59.61 | 0.0 | 573 |
LLPS-Hos-0008 | Homo sapiens | 59.61 | 0.0 | 575 |
LLPS-Cap-2472 | Cavia porcellus | 59.61 | 0.0 | 576 |
LLPS-Poa-3846 | Pongo abelii | 59.61 | 0.0 | 573 |
LLPS-Cea-1768 | Cercocebus atys | 59.61 | 0.0 | 575 |
LLPS-Mea-0700 | Mesocricetus auratus | 59.61 | 0.0 | 574 |
LLPS-Maf-4287 | Macaca fascicularis | 59.61 | 0.0 | 575 |
LLPS-Mum-3405 | Mus musculus | 59.61 | 0.0 | 575 |
LLPS-Mal-4235 | Mandrillus leucophaeus | 59.61 | 0.0 | 574 |
LLPS-Paa-3552 | Papio anubis | 59.61 | 0.0 | 575 |
LLPS-Scf-2491 | Scleropages formosus | 59.56 | 0.0 | 574 |
LLPS-Tar-2590 | Takifugu rubripes | 59.56 | 0.0 | 570 |
LLPS-Yal-0033 | Yarrowia lipolytica | 59.42 | 0.0 | 543 |
LLPS-Urm-1529 | Ursus maritimus | 59.39 | 0.0 | 573 |
LLPS-Ict-4352 | Ictidomys tridecemlineatus | 59.39 | 0.0 | 577 |
LLPS-Chs-2450 | Chlorocebus sabaeus | 59.39 | 0.0 | 572 |
LLPS-Fud-2617 | Fukomys damarensis | 59.39 | 0.0 | 573 |
LLPS-Aim-3168 | Ailuropoda melanoleuca | 59.39 | 0.0 | 573 |
LLPS-Mup-3762 | Mustela putorius furo | 59.39 | 0.0 | 570 |
LLPS-Ran-3826 | Rattus norvegicus | 59.39 | 0.0 | 573 |
LLPS-Dar-1628 | Danio rerio | 59.34 | 0.0 | 566 |
LLPS-Ved-0846 | Verticillium dahliae | 59.34 | 0.0 | 556 |
LLPS-Asm-1638 | Astyanax mexicanus | 59.34 | 0.0 | 568 |
LLPS-Cii-1692 | Ciona intestinalis | 59.3 | 0.0 | 574 |
LLPS-Cae-0855 | Caenorhabditis elegans | 59.21 | 0.0 | 568 |
LLPS-Scj-1324 | Schizosaccharomyces japonicus | 59.16 | 0.0 | 560 |
LLPS-Map-1159 | Magnaporthe poae | 59.09 | 0.0 | 565 |
LLPS-Pytr-1510 | Pyrenophora triticirepentis | 59.07 | 0.0 | 538 |
LLPS-Gag-0749 | Gaeumannomyces graminis | 58.87 | 0.0 | 561 |
LLPS-Mod-0460 | Monodelphis domestica | 58.77 | 0.0 | 565 |
LLPS-Cas-1407 | Carlito syrichta | 58.73 | 0.0 | 561 |
LLPS-Sus-0009 | Sus scrofa | 58.52 | 0.0 | 546 |
LLPS-Ora-3550 | Ornithorhynchus anatinus | 58.46 | 0.0 | 558 |
LLPS-Icp-0434 | Ictalurus punctatus | 58.46 | 0.0 | 564 |
LLPS-Tag-2072 | Taeniopygia guttata | 58.42 | 0.0 | 565 |
LLPS-Orc-2507 | Oryctolagus cuniculus | 58.33 | 0.0 | 553 |
LLPS-Orl-1966 | Oryzias latipes | 58.33 | 0.0 | 571 |
LLPS-Otg-2294 | Otolemur garnettii | 58.3 | 0.0 | 567 |
LLPS-Mam-3670 | Macaca mulatta | 58.24 | 0.0 | 535 |
LLPS-Tut-0673 | Tursiops truncatus | 58.11 | 0.0 | 551 |
LLPS-Nol-1402 | Nomascus leucogenys | 58.08 | 0.0 | 548 |
LLPS-Fia-3442 | Ficedula albicollis | 57.99 | 0.0 | 560 |
LLPS-Pes-1713 | Pelodiscus sinensis | 57.73 | 0.0 | 555 |
LLPS-Cis-1282 | Ciona savignyi | 57.55 | 0.0 | 560 |
LLPS-Asc-0919 | Aspergillus clavatus | 57.53 | 0.0 | 568 |
LLPS-Ors-2075 | Oryza sativa | 57.08 | 0.0 | 529 |
LLPS-Meg-0026 | Meleagris gallopavo | 56.89 | 0.0 | 550 |
LLPS-Ova-2371 | Ovis aries | 56.46 | 0.0 | 532 |
LLPS-Asg-0172 | Ashbya gossypii | 56.4 | 0.0 | 541 |
LLPS-Gaga-1352 | Gallus gallus | 56.16 | 0.0 | 537 |