DrLLPS - Data resource of LLPS

LLPS-Art-1721
At5g59910

▼ OVERVIEW


Status:	Reviewed
Protein Name:	Histone H2B.11; HTB4
Gene Name:	At5g59910, MMN10.15
Ensembl Gene:	AT5G59910
Ensembl Protein:	AT5G59910.1
Organism:	Arabidopsis thaliana
Taxa ID:	3702
LLPS Type:	Others

▼ PROPERTY

——— Disorder propensity (calculated by IUPred2A)

▼ Classification

Condensates:

Condensate	Description	Tissue/Cell	PMIDs
Nucleolus	"...We identified 1602 proteins in the nucleolar and 2544 proteins in the nuclear fraction with an overlap of 1429 proteins."	Arabidopsis thaliana cells	26980300
Nucleolus	"...Here, we describe the first proteomic analysis of plant nucleoli, in which we have identified 217 proteins."	Protoplasts	15496452

▼ FUNCTION

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

▼ CROSS REFERENCE

Database	Nucleotide ID	Protein ID
Ensembl	AT5G59910.1	AT5G59910.1
UniProt		P40283, H2B11_ARATH, Q5PP00, Q8LDE5, Q9FJE5
GeneBank	BT020297, AY057643, AB015475, CP002688, AY086049, Z18202	AED97250.1, AAV84518.1, BAB08359.1, AAL15274.1, AAM63259.1, CAA79135.1
RefSeq	NM_125384.3	NP_200799.1

▼ SEQUENCE

Protein Sequence (FASTA)
1 MAPKAEKKPA EKKPASEKPV EEKSKAEKAP AEKKPKAGKK LPKEAGAGGD KKKKMKKKSV 60 61 ETYKIYIFKV LKQVHPDIGI SSKAMGIMNS FINDIFEKLA QEASKLARYN KKPTITSREI 120 121 QTAVRLVLPG ELAKHAVSEG TKAVTKFTSS 150
Nucleotide CDS Sequence (FASTA)
1 ATGGCGCCGA AAGCAGAGAA GAAGCCCGCT GAGAAGAAAC CAGCTTCCGA GAAGCCGGTG 60 61 GAGGAGAAAT CAAAAGCCGA GAAAGCTCCG GCGGAGAAGA AACCAAAGGC CGGAAAGAAG 120 121 CTCCCGAAGG AAGCTGGTGC CGGAGGCGAC AAGAAGAAAA AGATGAAGAA GAAGAGTGTC 180 181 GAGACTTACA AGATCTACAT CTTCAAGGTG CTTAAGCAAG TTCATCCCGA TATCGGAATC 240 241 TCCAGCAAAG CGATGGGGAT CATGAACAGT TTCATTAACG ATATCTTCGA GAAGCTTGCT 300 301 CAAGAGGCGT CGAAGCTTGC GAGGTACAAT AAGAAACCTA CGATCACTTC TCGGGAGATT 360 361 CAGACTGCTG TGAGATTGGT GCTTCCTGGA GAGTTGGCGA AGCATGCCGT TTCTGAGGGG 420 421 ACTAAAGCCG TCACGAAATT CACCAGCTCT TGA 453

▼ KEYWORD

ID	Family
KW-0007	Acetylation
KW-0158	Chromosome
KW-0181	Complete proteome
KW-0238	DNA-binding
KW-1017	Isopeptide bond
KW-0488	Methylation
KW-0544	Nucleosome core
KW-0539	Nucleus
KW-1185	Reference proteome
KW-0832	Ubl conjugation

▼ GENE ONTOLOGY

ID	Classification	Description
GO:0009570	Cellular Component	Chloroplast stroma
GO:0009534	Cellular Component	Chloroplast thylakoid
GO:0005730	Cellular Component	Nucleolus
GO:0000786	Cellular Component	Nucleosome
GO:0003677	Molecular Function	DNA binding
GO:0046982	Molecular Function	Protein heterodimerization activity

▼ KEGG

ath:AT5G59910

▼ ANNOTATION

Disorder
IUPred2A

Domain
SMART	Pfam	InterPro	LCR-eXXXplorer	CDD
PROSITE	Gene3D

PTM
EPSD	PLMD	dbPTM

Physicochemical
Compute pI/Mw	AAindex

Function
PIRSF

Localization
COMPARTMENTS

▼ ORTHOLOGY

DrLLPS ID	Organism	Identity	E-value	Score
LLPS-Arl-2839	Arabidopsis lyrata	98.99	5e-59	186
LLPS-Viv-2502	Vitis vinifera	97.83	8e-59	186
LLPS-Phv-2232	Phaseolus vulgaris	97.83	5e-59	186
LLPS-Mae-1346	Manihot esculenta	97.83	2e-58	185
LLPS-Nia-1944	Nicotiana attenuata	97.83	9e-59	186
LLPS-Coc-2058	Corchorus capsularis	97.83	1e-58	185
LLPS-Glm-2603	Glycine max	97.83	6e-59	186
LLPS-Sot-1201	Solanum tuberosum	97.83	2e-58	185
LLPS-Met-1443	Medicago truncatula	97.83	3e-59	186
LLPS-Cus-1286	Cucumis sativus	97.83	9e-59	186
LLPS-Prp-2053	Prunus persica	97.8	4e-58	184
LLPS-Sol-0691	Solanum lycopersicum	97.8	5e-58	184
LLPS-Hea-0587	Helianthus annuus	97.8	1e-58	185
LLPS-Via-1619	Vigna angularis	97.8	2e-58	185
LLPS-Gor-1818	Gossypium raimondii	97.03	5e-60	189
LLPS-Thc-1720	Theobroma cacao	97.03	4e-60	189
LLPS-Brr-0650	Brassica rapa	96.74	3e-58	184
LLPS-Pot-2167	Populus trichocarpa	96.74	4e-58	184
LLPS-Bro-1634	Brassica oleracea	96.74	3e-58	184
LLPS-Amt-0786	Amborella trichopoda	96.7	4e-58	184
LLPS-Brn-0240	Brassica napus	96.7	1e-57	183
LLPS-Dac-2415	Daucus carota	96.7	3e-57	182
LLPS-Ors-0636	Oryza sativa	95.65	9e-56	180
LLPS-Orp-0440	Oryza punctata	95.65	2e-56	180
LLPS-Sob-2331	Sorghum bicolor	95.65	2e-56	180
LLPS-Orm-1555	Oryza meridionalis	95.65	2e-56	180
LLPS-Org-1624	Oryza glaberrima	95.65	5e-56	179
LLPS-Zem-0768	Zea mays	95.65	4e-56	179
LLPS-Orb-2296	Oryza barthii	95.65	2e-56	180
LLPS-Ori-1190	Oryza indica	95.65	2e-56	180
LLPS-Orni-1442	Oryza nivara	95.65	2e-56	180
LLPS-Lep-1932	Leersia perrieri	95.65	2e-56	180
LLPS-Sei-2413	Setaria italica	95.65	4e-56	179
LLPS-Tra-1344	Triticum aestivum	95.65	9e-57	181
LLPS-Brd-2289	Brachypodium distachyon	95.65	2e-56	180
LLPS-Orbr-1237	Oryza brachyantha	94.57	7e-56	179
LLPS-Hov-1550	Hordeum vulgare	94.57	7e-56	179
LLPS-Orr-2267	Oryza rufipogon	93.48	3e-55	177
LLPS-Tru-1544	Triticum urartu	93.48	1e-55	177
LLPS-Orgl-1599	Oryza glumaepatula	93.48	4e-55	177
LLPS-Php-2112	Physcomitrella patens	93.41	1e-56	180
LLPS-Caf-3343	Canis familiaris	84.44	4e-50	163
LLPS-Myl-3771	Myotis lucifugus	84.44	1e-49	162
LLPS-Dar-2066	Danio rerio	83.33	8e-50	162
LLPS-Anp-0630	Anas platyrhynchos	83.33	9e-50	162
LLPS-Loa-3557	Loxodonta africana	83.33	7e-50	162
LLPS-Pes-3778	Pelodiscus sinensis	83.33	9e-50	162
LLPS-Sah-3850	Sarcophilus harrisii	83.33	7e-50	162
LLPS-Asm-2976	Astyanax mexicanus	83.33	2e-49	162
LLPS-Scf-2797	Scleropages formosus	83.33	8e-50	162
LLPS-Hos-2105	Homo sapiens	82.22	2e-49	161
LLPS-Pat-3599	Pan troglodytes	82.22	2e-49	161
LLPS-Pof-4102	Poecilia formosa	82.22	3e-49	160
LLPS-Urm-2634	Ursus maritimus	82.22	4e-48	158
LLPS-Pap-2071	Pan paniscus	82.22	1e-49	162
LLPS-Fec-4151	Felis catus	82.22	5e-48	158
LLPS-Lac-1123	Latimeria chalumnae	82.22	3e-49	161
LLPS-Man-3209	Macaca nemestrina	82.22	1e-49	162
LLPS-Otg-0117	Otolemur garnettii	82.22	8e-48	157
LLPS-Rhb-2792	Rhinopithecus bieti	82.22	2e-49	161
LLPS-Poa-3224	Pongo abelii	82.22	1e-49	162
LLPS-Ten-3753	Tetraodon nigroviridis	82.22	4e-49	160
LLPS-Eqc-4792	Equus caballus	82.22	2e-49	161
LLPS-Mam-0353	Macaca mulatta	82.22	1e-49	162
LLPS-Cas-2866	Carlito syrichta	82.22	1e-49	162
LLPS-Nol-0376	Nomascus leucogenys	82.22	2e-49	161
LLPS-Ict-1100	Ictidomys tridecemlineatus	82.22	1e-49	162
LLPS-Maf-1670	Macaca fascicularis	82.22	1e-49	162
LLPS-Mum-2788	Mus musculus	82.22	1e-49	162
LLPS-Mea-3460	Mesocricetus auratus	82.22	1e-49	162
LLPS-Chs-4436	Chlorocebus sabaeus	82.22	2e-49	161
LLPS-Sus-1161	Sus scrofa	82.22	1e-49	162
LLPS-Cea-0127	Cercocebus atys	82.22	1e-49	162
LLPS-Aon-0353	Aotus nancymaae	82.22	1e-49	162
LLPS-Gog-2580	Gorilla gorilla	82.22	2e-49	161
LLPS-Fud-1950	Fukomys damarensis	82.22	1e-49	162
LLPS-Icp-2130	Ictalurus punctatus	82.22	3e-49	160
LLPS-Xim-0850	Xiphophorus maculatus	82.22	2e-49	161
LLPS-Tut-2288	Tursiops truncatus	82.22	1e-49	162
LLPS-Dio-0242	Dipodomys ordii	82.22	4e-48	158
LLPS-Bot-0242	Bos taurus	82.22	1e-49	162
LLPS-Ran-0001	Rattus norvegicus	82.22	5e-48	158
LLPS-Ere-0769	Erinaceus europaeus	82.22	1e-47	157
LLPS-Paa-3867	Papio anubis	82.22	2e-49	161
LLPS-Mal-0536	Mandrillus leucophaeus	82.22	1e-49	162
LLPS-Mup-2374	Mustela putorius furo	82.22	5e-48	158
LLPS-Ova-2018	Ovis aries	82.22	4e-48	158
LLPS-Orc-3782	Oryctolagus cuniculus	81.11	3e-47	155
LLPS-Caj-4009	Callithrix jacchus	81.11	4e-49	160
LLPS-Gaa-2312	Gasterosteus aculeatus	81.11	2e-48	159
LLPS-Aim-2134	Ailuropoda melanoleuca	81.11	4e-49	161
LLPS-Ast-1331	Aspergillus terreus	78.89	2e-46	154
LLPS-Nef-1156	Neosartorya fischeri	78.89	3e-46	154
LLPS-Dos-0967	Dothistroma septosporum	78.89	2e-46	154
LLPS-Asfu-0898	Aspergillus fumigatus	78.89	3e-46	154
LLPS-Asc-0571	Aspergillus clavatus	78.89	2e-46	154
LLPS-Asni-1247	Aspergillus niger	78.89	2e-46	154
LLPS-Asn-1385	Aspergillus nidulans	78.89	2e-46	154
LLPS-Asf-0233	Aspergillus flavus	78.89	2e-46	154
LLPS-Tum-1344	Tuber melanosporum	78.89	2e-46	154
LLPS-Scc-1455	Schizosaccharomyces cryophilus	77.78	1e-45	151
LLPS-Cae-0368	Caenorhabditis elegans	77.78	8e-48	157
LLPS-Scp-0271	Schizosaccharomyces pombe	77.78	1e-45	152
LLPS-Usm-0062	Ustilago maydis	76.67	1e-45	152
LLPS-Spr-0846	Sporisorium reilianum	76.67	1e-45	152
LLPS-Sac-1650	Saccharomyces cerevisiae	76.67	9e-46	152
LLPS-Cis-1193	Ciona savignyi	76.6	1e-18	84.0
LLPS-Yal-1585	Yarrowia lipolytica	73.03	2e-42	144

LLPS-Art-1721At5g59910

Protein Sequence

Nucleotide Sequence

LLPS-Art-1721
At5g59910