LLPS-Abg-1945
ABSGL_04618.1 scaffold 5475
Integrated Annotations
▼ OVERVIEW
Status: | Unreviewed |
Protein Name: | PAN2-PAN3 deadenylation complex catalytic subunit PAN2; PAB1P-dependent poly(A)-specific ribonuclease; Poly(A)-nuclease deadenylation complex subunit 2; PAN deadenylation complex subunit 2 |
Gene Name: | ABSGL_04618.1 scaffold 5475, PAN2 |
Ensembl Gene: | SAL99047 |
Ensembl Protein: | SAL99047 |
Organism: | Absidia glauca |
Taxa ID: | 4829 |
LLPS Type: | Others |
▼ Classification
Condensates:
Condensate | Evidence | Orthologs |
---|---|---|
P-body, Stress granule | Predicted from orthologs | (View) |
▼ FUNCTION
Catalytic subunit of the poly(A)-nuclease (PAN) deadenylation complex, one of two cytoplasmic mRNA deadenylases involved in mRNA turnover. PAN specifically shortens poly(A) tails of RNA and the activity is stimulated by poly(A)-binding protein PAB1. PAN deadenylation is followed by rapid degradation of the shortened mRNA tails by the CCR4-NOT complex. Deadenylated mRNAs are then degraded by two alternative mechanisms, namely exosome-mediated 3'-5' exonucleolytic degradation, or deadenlyation-dependent mRNA decaping and subsequent 5'-3' exonucleolytic degradation by XRN1. May also be involved in post-transcriptional maturation of mRNA poly(A) tails. |
▼ CROSS REFERENCE
Database | Nucleotide ID | Protein ID |
---|---|---|
Ensembl | SAL99047 | SAL99047 |
UniProt | A0A168MRG0, A0A168MRG0_ABSGL | |
GeneBank | LT552383 | SAL99047.1 |
▼ SEQUENCE
Protein Sequence (FASTA) |
---|
1 MESTWTEVQQ VCDTNPNKVS PVSALCWDPY HELLWAGNDT GRVCSYYGKG LQRYTSFKAH 60 61 ADQQIRQIRV TERGVISLSP KSVQMRDRQG LVRWNISTEH MKDLHCMTTT SLTNGDLLVA 120 121 GQQNDMLMVS AARGTVTKSI PGASNIVVMR NLPRAICCGS MLGDVTIRDT RTMKVEQRVQ 180 181 AHTATLSDLD VSGNLLLTCG FSQRQGSLIM DPLVKVYDIR MAIRSLAPIP FPSGPMFLKM 240 241 HPTLSSTCLV GSQTGQFQMC DVSSLAMGSF APTSHFYQVQ SSSYITAMDI SSSGQTLVFG 300 301 DGNSFIHQYA DRDNYVMNPY SIPVTTPDTA PPPNVLVNND TPLSAVGMPF YTEPLLSAWT 360 361 NGSVYDVGHP APQIDDDILK SIKTIDFVGY APNPGTIHRN QIPRRKKQPH KKDIPKFRSE 420 421 QERELLSASV LLDESGELMH SGRRSSSVGD VLMDLHGIVM PNHYRHVEIQ YSKFGVDDFD 480 481 FGYYNRTLYG GLETNIRNSY CNSLLQVLYF TLPLRQIAKC HICTSCDKEN CLMCELGFLF 540 541 RMLEDSNGQN CQATNFLKAF STIPQADALG LFEPESPTRN ISYSMMIQNF VRFILEQLHQ 600 601 EANTPTSNPV ILTTYKSPPK TTDKEEETDA DTPATIPSPM QQLFGLQTLT QSKCSVCDNE 660 661 ASRITYPFAV DLLYPKKQRK RTFASLLKTS MYRENQTKAW CATCQKYQST TTKKIIQGLP 720 721 GVLVINSGAY SSEEASIWRQ NGPSSPKTRT ESPNQENEGP SEVASWLPER FGILINGPEL 780 781 TIKLLPLDKE IPPEFVGPPE TCAIYELSST ILQVQAEEEA AHLVAQVKIP DTERMTYTSA 840 841 TGLEEEEKAK SPWYVFNDFL VKRIRAEETT SFKGLWKTPA VIQYTRVDID SLLDLDTLSS 900 901 EVDYSLLFKE MSIAKNTPEK SSYDILTKDE MPTPGTLIAI DSEFVALRQE ETEIRSDGTK 960 961 SLIRPSTLSL ARLSVTRGED GDKEGLPFID DYIVTSEPVV DYLTEFSGIE ADDLNPMTSH 1020 1021 RTLVPLKVAY KKIRLLVDLG CVFIGHGLKK DFRIINILVP PDQIIDTVDI YHIRNRHRKI 1080 1081 SLRFLAWHLL GQEIQSEGHD SIVDAKTALV LYKKYLEYRE KGTFGQVLEG VYAAGHKSNW 1140 1141 LKAPKDTPSV PSTPKVEQSH SYFTPGWAL 1169 |
▼ KEYWORD
▼ GENE ONTOLOGY
ID | Classification | Description |
Cellular Component | PAN complex | |
Molecular Function | Metal ion binding | |
Molecular Function | Nucleic acid binding | |
Molecular Function | Poly(A)-specific ribonuclease activity | |
Biological Process | MRNA processing | |
Biological Process | Nuclear-transcribed mRNA poly(A) tail shortening |
▼ ORTHOLOGY
DrLLPS ID | Organism | Identity | E-value | Score |
---|---|---|---|---|
LLPS-Cii-1716 | Ciona intestinalis | 54.02 | 6e-67 | 231 |
LLPS-Osl-0937 | Ostreococcus lucimarinus | 51.61 | 3e-63 | 220 |
LLPS-Scs-1066 | Sclerotinia sclerotiorum | 47.9 | 8e-60 | 226 |
LLPS-Leo-0233 | Lepisosteus oculatus | 43.94 | 5e-78 | 285 |
LLPS-Poa-3876 | Pongo abelii | 43.7 | 5e-80 | 289 |
LLPS-Fuv-0770 | Fusarium verticillioides | 41.21 | 4e-91 | 306 |
LLPS-Put-1274 | Puccinia triticina | 40.83 | 5e-35 | 149 |
LLPS-Fuo-1045 | Fusarium oxysporum | 40.45 | 9e-89 | 299 |
LLPS-Miv-1580 | Microbotryum violaceum | 40.05 | 0.0 | 803 |
LLPS-Pug-0117 | Puccinia graminis | 39.55 | 6e-14 | 80.9 |
LLPS-Crn-1254 | Cryptococcus neoformans | 39.42 | 0.0 | 728 |
LLPS-Gas-1286 | Galdieria sulphuraria | 39.21 | 6e-55 | 213 |
LLPS-Tum-1577 | Tuber melanosporum | 38.13 | 0.0 | 731 |
LLPS-Trr-0872 | Trichoderma reesei | 37.97 | 0.0 | 747 |
LLPS-Cog-1051 | Colletotrichum gloeosporioides | 37.74 | 0.0 | 748 |
LLPS-Pof-1413 | Poecilia formosa | 37.62 | 0.0 | 699 |
LLPS-Gaga-3631 | Gallus gallus | 37.52 | 0.0 | 699 |
LLPS-Spr-0613 | Sporisorium reilianum | 37.5 | 1e-157 | 514 |
LLPS-Ved-1409 | Verticillium dahliae | 37.39 | 0.0 | 691 |
LLPS-Fia-1463 | Ficedula albicollis | 37.36 | 0.0 | 702 |
LLPS-Ten-2327 | Tetraodon nigroviridis | 37.31 | 0.0 | 683 |
LLPS-Meg-0076 | Meleagris gallopavo | 37.23 | 0.0 | 677 |
LLPS-Cogr-0246 | Colletotrichum graminicola | 37.21 | 0.0 | 750 |
LLPS-Nol-0528 | Nomascus leucogenys | 37.19 | 2e-125 | 421 |
LLPS-Xim-3299 | Xiphophorus maculatus | 37.1 | 0.0 | 697 |
LLPS-Scf-3812 | Scleropages formosus | 37.08 | 0.0 | 684 |
LLPS-Coo-0952 | Colletotrichum orbiculare | 37.01 | 0.0 | 731 |
LLPS-Beb-0623 | Beauveria bassiana | 36.98 | 0.0 | 760 |
LLPS-Scp-1489 | Schizosaccharomyces pombe | 36.92 | 0.0 | 729 |
LLPS-Dar-3387 | Danio rerio | 36.91 | 4e-12 | 72.8 |
LLPS-Scm-3441 | Scophthalmus maximus | 36.89 | 0.0 | 664 |
LLPS-Pyt-1307 | Pyrenophora teres | 36.87 | 0.0 | 743 |
LLPS-Orbr-1756 | Oryza brachyantha | 36.81 | 7e-11 | 70.5 |
LLPS-Orn-3221 | Oreochromis niloticus | 36.8 | 0.0 | 682 |
LLPS-Fus-0330 | Fusarium solani | 36.8 | 7e-128 | 425 |
LLPS-Asn-1423 | Aspergillus nidulans | 36.78 | 0.0 | 728 |
LLPS-Orl-2531 | Oryzias latipes | 36.78 | 0.0 | 671 |
LLPS-Gaa-3809 | Gasterosteus aculeatus | 36.74 | 0.0 | 670 |
LLPS-Map-1411 | Magnaporthe poae | 36.73 | 0.0 | 725 |
LLPS-Scj-1391 | Schizosaccharomyces japonicus | 36.69 | 0.0 | 724 |
LLPS-Lem-0235 | Leptosphaeria maculans | 36.68 | 0.0 | 732 |
LLPS-Icp-3899 | Ictalurus punctatus | 36.67 | 0.0 | 674 |
LLPS-Pytr-1632 | Pyrenophora triticirepentis | 36.62 | 0.0 | 734 |
LLPS-Anc-0658 | Anolis carolinensis | 36.57 | 0.0 | 708 |
LLPS-Asm-2618 | Astyanax mexicanus | 36.46 | 0.0 | 669 |
LLPS-Mea-2826 | Mesocricetus auratus | 36.43 | 0.0 | 692 |
LLPS-Cas-3899 | Carlito syrichta | 36.4 | 0.0 | 686 |
LLPS-Nef-1244 | Neosartorya fischeri | 36.39 | 0.0 | 723 |
LLPS-Orc-2411 | Oryctolagus cuniculus | 36.39 | 0.0 | 685 |
LLPS-Asfu-1272 | Aspergillus fumigatus | 36.39 | 0.0 | 712 |
LLPS-Ict-3881 | Ictidomys tridecemlineatus | 36.37 | 1e-177 | 560 |
LLPS-Sah-1866 | Sarcophilus harrisii | 36.36 | 0.0 | 655 |
LLPS-Blg-1525 | Blumeria graminis | 36.36 | 0.0 | 724 |
LLPS-Anp-2788 | Anas platyrhynchos | 36.36 | 0.0 | 639 |
LLPS-Mum-3052 | Mus musculus | 36.33 | 0.0 | 690 |
LLPS-Ran-1096 | Rattus norvegicus | 36.33 | 0.0 | 689 |
LLPS-Pes-1224 | Pelodiscus sinensis | 36.3 | 0.0 | 665 |
LLPS-Pat-0899 | Pan troglodytes | 36.3 | 0.0 | 686 |
LLPS-Pap-3376 | Pan paniscus | 36.3 | 0.0 | 686 |
LLPS-Tar-3013 | Takifugu rubripes | 36.25 | 0.0 | 680 |
LLPS-Loa-4165 | Loxodonta africana | 36.25 | 0.0 | 665 |
LLPS-Fud-3710 | Fukomys damarensis | 36.24 | 0.0 | 677 |
LLPS-Ast-1510 | Aspergillus terreus | 36.21 | 0.0 | 702 |
LLPS-Gog-2706 | Gorilla gorilla | 36.18 | 0.0 | 686 |
LLPS-Aim-3621 | Ailuropoda melanoleuca | 36.18 | 0.0 | 682 |
LLPS-Asni-0745 | Aspergillus niger | 36.17 | 0.0 | 696 |
LLPS-Maf-3059 | Macaca fascicularis | 36.14 | 0.0 | 682 |
LLPS-Paa-1694 | Papio anubis | 36.14 | 0.0 | 665 |
LLPS-Mam-2857 | Macaca mulatta | 36.14 | 0.0 | 682 |
LLPS-Caf-4011 | Canis familiaris | 36.14 | 0.0 | 692 |
LLPS-Trv-1166 | Trichoderma virens | 36.13 | 7e-110 | 376 |
LLPS-Fec-3523 | Felis catus | 36.1 | 0.0 | 692 |
LLPS-Hos-0408 | Homo sapiens | 36.1 | 0.0 | 684 |
LLPS-Asc-1184 | Aspergillus clavatus | 36.09 | 0.0 | 730 |
LLPS-Aon-4696 | Aotus nancymaae | 36.05 | 0.0 | 683 |
LLPS-Sus-3491 | Sus scrofa | 36.05 | 0.0 | 681 |
LLPS-Mup-0732 | Mustela putorius furo | 36.05 | 0.0 | 684 |
LLPS-Bot-0392 | Bos taurus | 36.05 | 0.0 | 681 |
LLPS-Rhb-3863 | Rhinopithecus bieti | 36.05 | 0.0 | 682 |
LLPS-Usm-1493 | Ustilago maydis | 36.05 | 6e-155 | 507 |
LLPS-Eqc-1050 | Equus caballus | 36.05 | 0.0 | 682 |
LLPS-Mal-4486 | Mandrillus leucophaeus | 36.04 | 0.0 | 687 |
LLPS-Otg-3709 | Otolemur garnettii | 36.03 | 0.0 | 696 |
LLPS-Caj-4811 | Callithrix jacchus | 36.02 | 0.0 | 683 |
LLPS-Gag-1478 | Gaeumannomyces graminis | 36.01 | 0.0 | 710 |
LLPS-Cea-0502 | Cercocebus atys | 35.97 | 0.0 | 683 |
LLPS-Man-4247 | Macaca nemestrina | 35.97 | 0.0 | 681 |
LLPS-Chs-4486 | Chlorocebus sabaeus | 35.93 | 0.0 | 683 |
LLPS-Ova-3821 | Ovis aries | 35.93 | 0.0 | 678 |
LLPS-Myl-1121 | Myotis lucifugus | 35.89 | 0.0 | 688 |
LLPS-Vir-1802 | Vigna radiata | 35.86 | 6e-10 | 67.4 |
LLPS-Via-2046 | Vigna angularis | 35.86 | 7e-10 | 67.8 |
LLPS-Urm-2045 | Ursus maritimus | 35.81 | 0.0 | 682 |
LLPS-Xet-2874 | Xenopus tropicalis | 35.81 | 0.0 | 700 |
LLPS-Cap-2317 | Cavia porcellus | 35.7 | 0.0 | 682 |
LLPS-Mel-0943 | Melampsora laricipopulina | 35.57 | 0.0 | 667 |
LLPS-Asf-0192 | Aspergillus flavus | 35.56 | 0.0 | 694 |
LLPS-Aso-0823 | Aspergillus oryzae | 35.48 | 0.0 | 692 |
LLPS-Ora-2823 | Ornithorhynchus anatinus | 35.44 | 1e-169 | 535 |
LLPS-Chr-1395 | Chlamydomonas reinhardtii | 35.4 | 6e-37 | 156 |
LLPS-Phn-1341 | Phaeosphaeria nodorum | 35.32 | 0.0 | 646 |
LLPS-Scc-1282 | Schizosaccharomyces cryophilus | 35.03 | 0.0 | 694 |
LLPS-Mao-0272 | Magnaporthe oryzae | 34.66 | 0.0 | 623 |
LLPS-Zyt-1485 | Zymoseptoria tritici | 34.63 | 0.0 | 650 |
LLPS-Mod-0176 | Monodelphis domestica | 34.42 | 2e-10 | 68.2 |
LLPS-Tut-0876 | Tursiops truncatus | 34.38 | 3e-14 | 79.0 |
LLPS-Sot-0079 | Solanum tuberosum | 34.09 | 4e-11 | 68.9 |
LLPS-Met-0278 | Medicago truncatula | 34.01 | 5e-12 | 74.3 |
LLPS-Dos-1491 | Dothistroma septosporum | 33.84 | 0.0 | 641 |
LLPS-Nec-1021 | Neurospora crassa | 33.78 | 0.0 | 634 |
LLPS-Drm-1684 | Drosophila melanogaster | 33.41 | 0.0 | 613 |
LLPS-Cym-0703 | Cyanidioschyzon merolae | 33.33 | 1e-10 | 69.7 |
LLPS-Lac-2979 | Latimeria chalumnae | 33.33 | 0.0 | 584 |
LLPS-Cis-1937 | Ciona savignyi | 32.48 | 9e-163 | 521 |
LLPS-Tag-3385 | Taeniopygia guttata | 32.45 | 2e-12 | 73.2 |
LLPS-Yal-0978 | Yarrowia lipolytica | 32.02 | 1e-139 | 452 |
LLPS-Dio-0720 | Dipodomys ordii | 31.75 | 3e-10 | 67.0 |
LLPS-Php-0557 | Physcomitrella patens | 31.67 | 1e-180 | 570 |
LLPS-Brn-2912 | Brassica napus | 31.46 | 9e-11 | 70.5 |
LLPS-Tra-2673 | Triticum aestivum | 31.39 | 1e-09 | 64.3 |
LLPS-Gor-1403 | Gossypium raimondii | 31.16 | 2e-10 | 67.4 |
LLPS-Cae-1255 | Caenorhabditis elegans | 30.56 | 7e-10 | 65.1 |
LLPS-Brr-1401 | Brassica rapa | 30.53 | 1e-11 | 70.9 |
LLPS-Arl-1912 | Arabidopsis lyrata | 30.41 | 2e-12 | 73.2 |
LLPS-Coc-0572 | Corchorus capsularis | 30.27 | 3e-11 | 69.3 |
LLPS-Kop-1504 | Komagataella pastoris | 30.22 | 8e-164 | 523 |
LLPS-Art-0041 | Arabidopsis thaliana | 30.16 | 4e-11 | 68.9 |
LLPS-Asg-0865 | Ashbya gossypii | 29.63 | 1e-140 | 462 |
LLPS-Sob-1251 | Sorghum bicolor | 29.63 | 2e-12 | 73.6 |
LLPS-Sol-1375 | Solanum lycopersicum | 29.59 | 1e-11 | 70.5 |
LLPS-Glm-2592 | Glycine max | 29.47 | 2e-09 | 63.5 |
LLPS-Pot-2388 | Populus trichocarpa | 29.32 | 3e-11 | 69.3 |
LLPS-Sei-1087 | Setaria italica | 29.1 | 5e-12 | 72.0 |
LLPS-Mae-1283 | Manihot esculenta | 28.8 | 1e-10 | 67.4 |
LLPS-Phv-0655 | Phaseolus vulgaris | 28.57 | 2e-09 | 63.5 |
LLPS-Sac-1363 | Saccharomyces cerevisiae | 28.44 | 8e-127 | 424 |
LLPS-Cus-0069 | Cucumis sativus | 28.26 | 2e-09 | 63.9 |
LLPS-Chc-0820 | Chondrus crispus | 28.21 | 2e-119 | 406 |
LLPS-Hea-1761 | Helianthus annuus | 28.19 | 2e-09 | 63.5 |
LLPS-Prp-0672 | Prunus persica | 28.11 | 6e-10 | 65.1 |
LLPS-Zem-1140 | Zea mays | 27.89 | 2e-10 | 67.0 |
LLPS-Mua-0966 | Musa acuminata | 27.52 | 5e-11 | 68.6 |
LLPS-Orni-1155 | Oryza nivara | 27.17 | 2e-09 | 64.7 |
LLPS-Lep-1088 | Leersia perrieri | 27.17 | 3e-09 | 63.9 |
LLPS-Orp-0700 | Oryza punctata | 27.17 | 2e-09 | 64.7 |
LLPS-Orm-1696 | Oryza meridionalis | 27.17 | 3e-09 | 63.9 |
LLPS-Viv-0824 | Vitis vinifera | 26.67 | 1e-11 | 70.9 |