Sus scrofa      Paraspeckle


※ Paraspeckle introduction

    Paraspeckles are mammalian-specific nuclear bodies that often lie adjacent to splicing speckles, containing several multifunctional proteins, including PSF (PTB-associated splicing factor), p54nrb, PSP1andRBM14/CoAA/PSP2 (here- after referred to CoAA) (1), the long noncoding RNA NEAT1 assembles these protein components and is critical for paraspeckle formation. DIS3 was proved to be involved in controlling the formation of paraspeckles, nuclear bodies that are organized around NEAT1 lncRNA, whose short form was overexpressed in cells with mutated DIS3 (2). Paraspeckles regulate gene expression through a number of mechanisms, including sequestration of specific transcription factors and/or hyperedited mRNAs (3). Besides, RNA editing by the enzyme ADAR (Adenosine deaminase acting on RNA) was proved to occur in paraspeckles (4).

Reference
1. Chang, S. H., Chang, W. L., Lu, C. C., & Tarn, W. Y. (2014) Alanine repeats influence protein localization in splicing speckles and paraspeckles. Nucleic Acids Res, 42(22), 13788-13798. PMID: 25414336
2. Szczepinska, T., Kalisiak, K., Tomecki, R., Labno, A., Borowski, L. S., Kulinski, T. M., et al. (2015) DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts. Genome Res, 25(11), 1622-1633. PMID: 26294688
3. Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., et al. (2016) p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat Med, 22(8), 861-868. PMID: 27376578
4. Banerjee, A., Vest, K. E., Pavlath, G. K., & Corbett, A. H. (2017) Nuclear poly(A) binding protein 1 (PABPN1) and Matrin3 interact in muscle cells and regulate RNA processing. Nucleic Acids Res, 45(18), 10706-10725. PMID: 28977530


There are 34 genes.  Reviewed (0 or Unreviewed (34

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Sus-4501
ENSSSCG00000034805.1
A0A287ANG1
2
LLPS-Sus-3538
ENSSSCG00000017140.3
F1RZY6
CHMP6
3
LLPS-Sus-1259
ENSSSCG00000038031.1
A0A287A5N6
CPSF6
4
LLPS-Sus-2909
ENSSSCG00000031493.1
A0A287BG06
CYBA
5
LLPS-Sus-1400
ENSSSCG00000026806.2
K7GND3
DHX9
6
LLPS-Sus-0314
ENSSSCG00000009460.3
A0A287B3H4
DIS3
7
LLPS-Sus-0355
ENSSSCG00000021818.2
A0A287BDN7
ENOX1
8
LLPS-Sus-3260
ENSSSCG00000032633.1
A0A287AXK0
FAM53A
9
LLPS-Sus-2138
ENSSSCG00000010732.3
F1SDP5
FAM53B
10
LLPS-Sus-1444
ENSSSCG00000002383.3
A0A140TAJ8
FOS
11
LLPS-Sus-0675
ENSSSCG00000030798.2
A0A287BPC6
FUS
12
LLPS-Sus-2321
ENSSSCG00000027237.2
I3LEA0
GATA1
13
LLPS-Sus-4775
ENSSSCG00000003923.3
F1S364
HECTD3
14
LLPS-Sus-3475
ENSSSCG00000000288.3
A0A286ZPE3
HNRNPA1
15
LLPS-Sus-1153
ENSSSCG00000038331.1
A0A287AI93
IQCN
16
LLPS-Sus-2533
ENSSSCG00000005437.4
K7GM20
KLF4
17
LLPS-Sus-1191
ENSSSCG00000026784.2
A0A287ADV8
LMNB2
18
LLPS-Sus-4434
ENSSSCG00000021663.2
I3LFR6
NOL12
19
LLPS-Sus-0568
ENSSSCG00000023245.2
I3LSU1
NONO
20
LLPS-Sus-0940
ENSSSCG00000009569.3
A0A286ZKW2
PSPC1
21
LLPS-Sus-1096
ENSSSCG00000038008.1
A0A287B401
RBM14
22
LLPS-Sus-1169
ENSSSCG00000032437.1
F1RUT1
RBM4
23
LLPS-Sus-2926
ENSSSCG00000038304.1
Q06AT9
RBM4B
24
LLPS-Sus-1482
ENSSSCG00000012984.3
A0A286ZZ23
SCYL1
25
LLPS-Sus-0045
ENSSSCG00000035690.1
A0A287A4F2
SFPQ
26
LLPS-Sus-3976
ENSSSCG00000007804.3
F1RFI0
SH2B1
27
LLPS-Sus-0701
ENSSSCG00000003791.2
F6Q230
SRSF11
28
LLPS-Sus-0261
ENSSSCG00000023126.2
I3LNA4
TARDBP
29
LLPS-Sus-0826
ENSSSCG00000017950.3
Q9TUB2
TP53
30
LLPS-Sus-4561
ENSSSCG00000037035.1
A0A287B724
UVSSA
31
LLPS-Sus-1389
ENSSSCG00000025028.3
A1YPR8
XIAP
32
LLPS-Sus-3049
ENSSSCG00000008099.3
A0A287BMH9
ZC3H8
33
LLPS-Sus-1765
ENSSSCG00000023276.2
I3LAF2
ZNF24
34
LLPS-Sus-3111
ENSSSCG00000035770.1
A0A287AZI1
ZNF444