Macaca nemestrina      Paraspeckle


※ Paraspeckle introduction

    Paraspeckles are mammalian-specific nuclear bodies that often lie adjacent to splicing speckles, containing several multifunctional proteins, including PSF (PTB-associated splicing factor), p54nrb, PSP1andRBM14/CoAA/PSP2 (here- after referred to CoAA) (1), the long noncoding RNA NEAT1 assembles these protein components and is critical for paraspeckle formation. DIS3 was proved to be involved in controlling the formation of paraspeckles, nuclear bodies that are organized around NEAT1 lncRNA, whose short form was overexpressed in cells with mutated DIS3 (2). Paraspeckles regulate gene expression through a number of mechanisms, including sequestration of specific transcription factors and/or hyperedited mRNAs (3). Besides, RNA editing by the enzyme ADAR (Adenosine deaminase acting on RNA) was proved to occur in paraspeckles (4).

Reference
1. Chang, S. H., Chang, W. L., Lu, C. C., & Tarn, W. Y. (2014) Alanine repeats influence protein localization in splicing speckles and paraspeckles. Nucleic Acids Res, 42(22), 13788-13798. PMID: 25414336
2. Szczepinska, T., Kalisiak, K., Tomecki, R., Labno, A., Borowski, L. S., Kulinski, T. M., et al. (2015) DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts. Genome Res, 25(11), 1622-1633. PMID: 26294688
3. Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., et al. (2016) p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat Med, 22(8), 861-868. PMID: 27376578
4. Banerjee, A., Vest, K. E., Pavlath, G. K., & Corbett, A. H. (2017) Nuclear poly(A) binding protein 1 (PABPN1) and Matrin3 interact in muscle cells and regulate RNA processing. Nucleic Acids Res, 45(18), 10706-10725. PMID: 28977530


There are 33 genes.  Reviewed (0 or Unreviewed (33

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Man-0635
ENSMNEG00000016463.1
A0A2K6AWK0
2
LLPS-Man-0996
ENSMNEG00000035750.1
A0A2K6CL94
3
LLPS-Man-0973
ENSMNEG00000037408.1
A0A2K6CWJ4
CHMP6
4
LLPS-Man-1312
ENSMNEG00000036311.1
A0A2K6CPV5
CPSF6
5
LLPS-Man-1658
ENSMNEG00000040513.1
A0A2K6DFJ7
CYBA
6
LLPS-Man-0164
ENSMNEG00000041195.1
A0A2K6DJY7
DHX9
7
LLPS-Man-0163
ENSMNEG00000030275.1
A0A2K6BKJ5
DIS3
8
LLPS-Man-4310
ENSMNEG00000040967.1
A0A2K6DI90
ENOX1
9
LLPS-Man-4246
ENSMNEG00000036030.1
A0A2K6CMZ9
FAM53A
10
LLPS-Man-2035
ENSMNEG00000044479.1
A0A2K6E670
FAM53B
11
LLPS-Man-3343
ENSMNEG00000031655.1
A0A2K6BUI2
FOS
12
LLPS-Man-1652
ENSMNEG00000027646.1
A0A2K6B648
FUS
13
LLPS-Man-2439
ENSMNEG00000043842.1
A0A2K6E1V7
GATA1
14
LLPS-Man-0298
ENSMNEG00000037831.1
A0A2K6CZD8
HECTD3
15
LLPS-Man-2758
ENSMNEG00000042992.1
A0A2K6DWA3
HNRNPA1
16
LLPS-Man-4301
ENSMNEG00000031188.1
A0A2K6BRE5
IQCN
17
LLPS-Man-2792
ENSMNEG00000032059.1
A0A2K6BXA2
KLF4
18
LLPS-Man-0085
ENSMNEG00000043540.1
A0A2K6DZV2
LMNB2
19
LLPS-Man-1250
ENSMNEG00000009698.1
A0A2K6ASM7
NONO
20
LLPS-Man-1011
ENSMNEG00000027401.1
A0A2K6B4U4
PSPC1
21
LLPS-Man-1355
ENSMNEG00000014872.1
A0A2K6AVN4
RBM14
22
LLPS-Man-2982
ENSMNEG00000043371.1
A0A2K6DYR3
RBM4B
23
LLPS-Man-3638
ENSMNEG00000033206.1
A0A2K6C5B7
SCYL1
24
LLPS-Man-1859
ENSMNEG00000038895.1
A0A2K6D4S3
SFPQ
25
LLPS-Man-4027
ENSMNEG00000043010.1
A0A2K6DWB0
SH2B1
26
LLPS-Man-3062
ENSMNEG00000029428.1
A0A2K6BF50
SRSF11
27
LLPS-Man-2170
ENSMNEG00000030163.1
A0A2K6BKI8
TARDBP
28
LLPS-Man-3642
ENSMNEG00000038875.1
A0A2K6D4N4
TP53
29
LLPS-Man-0964
ENSMNEG00000034877.1
A0A2K6CFJ6
UVSSA
30
LLPS-Man-2038
ENSMNEG00000036769.1
A0A2K6CST8
XIAP
31
LLPS-Man-2430
ENSMNEG00000034502.1
A0A2K6CCW5
ZC3H8
32
LLPS-Man-4213
ENSMNEG00000029359.1
A0A2K6BEP4
ZNF24
33
LLPS-Man-4838
ENSMNEG00000028729.1
A0A2K6BAJ6
ZNF444