Macaca mulatta      Paraspeckle


※ Paraspeckle introduction

    Paraspeckles are mammalian-specific nuclear bodies that often lie adjacent to splicing speckles, containing several multifunctional proteins, including PSF (PTB-associated splicing factor), p54nrb, PSP1andRBM14/CoAA/PSP2 (here- after referred to CoAA) (1), the long noncoding RNA NEAT1 assembles these protein components and is critical for paraspeckle formation. DIS3 was proved to be involved in controlling the formation of paraspeckles, nuclear bodies that are organized around NEAT1 lncRNA, whose short form was overexpressed in cells with mutated DIS3 (2). Paraspeckles regulate gene expression through a number of mechanisms, including sequestration of specific transcription factors and/or hyperedited mRNAs (3). Besides, RNA editing by the enzyme ADAR (Adenosine deaminase acting on RNA) was proved to occur in paraspeckles (4).

Reference
1. Chang, S. H., Chang, W. L., Lu, C. C., & Tarn, W. Y. (2014) Alanine repeats influence protein localization in splicing speckles and paraspeckles. Nucleic Acids Res, 42(22), 13788-13798. PMID: 25414336
2. Szczepinska, T., Kalisiak, K., Tomecki, R., Labno, A., Borowski, L. S., Kulinski, T. M., et al. (2015) DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts. Genome Res, 25(11), 1622-1633. PMID: 26294688
3. Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., et al. (2016) p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat Med, 22(8), 861-868. PMID: 27376578
4. Banerjee, A., Vest, K. E., Pavlath, G. K., & Corbett, A. H. (2017) Nuclear poly(A) binding protein 1 (PABPN1) and Matrin3 interact in muscle cells and regulate RNA processing. Nucleic Acids Res, 45(18), 10706-10725. PMID: 28977530


There are 32 genes.  Reviewed (0 or Unreviewed (32

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Mam-2644
ENSMMUG00000003366.3
F7E8U5
2
LLPS-Mam-2776
ENSMMUG00000048382.1
A0A1D5QGV1
3
LLPS-Mam-2714
ENSMMUG00000040100.1
A5A6H2
c-fos
4
LLPS-Mam-0244
ENSMMUG00000003452.3
F7F4P7
CHMP6
5
LLPS-Mam-3206
ENSMMUG00000002921.3
A0A1D5R0C8
CPSF6
6
LLPS-Mam-0433
ENSMMUG00000014325.3
F7D4K1
CYBA
7
LLPS-Mam-0825
ENSMMUG00000005635.3
F6W5Y4
DHX9
8
LLPS-Mam-3521
ENSMMUG00000000787.3
F6RAL3
DIS3
9
LLPS-Mam-0336
ENSMMUG00000002330.3
F7C6A7
ENOX1
10
LLPS-Mam-3654
ENSMMUG00000008363.3
A0A1D5R4J6
FAM53A
11
LLPS-Mam-3153
ENSMMUG00000015216.3
F6VWG9
FAM53B
12
LLPS-Mam-3324
ENSMMUG00000019637.3
F6T5U5
FUS
13
LLPS-Mam-0257
ENSMMUG00000016464.3
F7GBH5
GATA1
14
LLPS-Mam-0981
ENSMMUG00000012993.3
F7HR90
HECTD3
15
LLPS-Mam-0438
ENSMMUG00000016354.3
F7GQ35
IQCN
16
LLPS-Mam-1524
ENSMMUG00000006088.3
F6VVB3
KLF4
17
LLPS-Mam-2701
ENSMMUG00000001192.3
F6R7X5
LMNB2
18
LLPS-Mam-3244
ENSMMUG00000012989.3
F7HT55
LOC711588
19
LLPS-Mam-0168
ENSMMUG00000047489.1
A0A1D5Q4K3
NOL12
20
LLPS-Mam-0629
ENSMMUG00000020481.3
F6UC36
NONO
21
LLPS-Mam-2603
ENSMMUG00000020262.3
F6XYS7
PSPC1
22
LLPS-Mam-2211
ENSMMUG00000020363.3
G7NC47
RBM14
23
LLPS-Mam-4100
ENSMMUG00000023477.3
F7E7N6
SCYL1
24
LLPS-Mam-0908
ENSMMUG00000019154.3
F6SSM0
SFPQ
25
LLPS-Mam-4193
ENSMMUG00000023524.3
A0A1D5R2V6
SH2B1
26
LLPS-Mam-2585
ENSMMUG00000013852.3
F6RMA5
SRSF11
27
LLPS-Mam-0219
ENSMMUG00000007456.3
F7A993
TARDBP
28
LLPS-Mam-4165
ENSMMUG00000008639.3
P56424
TP53
29
LLPS-Mam-3807
ENSMMUG00000032353.2
H9FTU3
XIAP
30
LLPS-Mam-2943
ENSMMUG00000044163.1
A0A1D5Q050
ZC3H8
31
LLPS-Mam-4357
ENSMMUG00000009322.3
F7HLR2
ZNF24
32
LLPS-Mam-4284
ENSMMUG00000017498.3
F6VBF8
ZNF444