Macaca fascicularis      Paraspeckle


※ Paraspeckle introduction

    Paraspeckles are mammalian-specific nuclear bodies that often lie adjacent to splicing speckles, containing several multifunctional proteins, including PSF (PTB-associated splicing factor), p54nrb, PSP1andRBM14/CoAA/PSP2 (here- after referred to CoAA) (1), the long noncoding RNA NEAT1 assembles these protein components and is critical for paraspeckle formation. DIS3 was proved to be involved in controlling the formation of paraspeckles, nuclear bodies that are organized around NEAT1 lncRNA, whose short form was overexpressed in cells with mutated DIS3 (2). Paraspeckles regulate gene expression through a number of mechanisms, including sequestration of specific transcription factors and/or hyperedited mRNAs (3). Besides, RNA editing by the enzyme ADAR (Adenosine deaminase acting on RNA) was proved to occur in paraspeckles (4).

Reference
1. Chang, S. H., Chang, W. L., Lu, C. C., & Tarn, W. Y. (2014) Alanine repeats influence protein localization in splicing speckles and paraspeckles. Nucleic Acids Res, 42(22), 13788-13798. PMID: 25414336
2. Szczepinska, T., Kalisiak, K., Tomecki, R., Labno, A., Borowski, L. S., Kulinski, T. M., et al. (2015) DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts. Genome Res, 25(11), 1622-1633. PMID: 26294688
3. Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., et al. (2016) p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat Med, 22(8), 861-868. PMID: 27376578
4. Banerjee, A., Vest, K. E., Pavlath, G. K., & Corbett, A. H. (2017) Nuclear poly(A) binding protein 1 (PABPN1) and Matrin3 interact in muscle cells and regulate RNA processing. Nucleic Acids Res, 45(18), 10706-10725. PMID: 28977530


There are 31 genes.  Reviewed (0 or Unreviewed (31

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Maf-0773
ENSMFAG00000032728.1
2
LLPS-Maf-1117
ENSMFAG00000031794.1
3
LLPS-Maf-1214
ENSMFAG00000031355.1
4
LLPS-Maf-1306
ENSMFAG00000000797.1
5
LLPS-Maf-1734
ENSMFAG00000030295.1
6
LLPS-Maf-3716
ENSMFAG00000038858.1
G7NWP4
EGM_00068
7
LLPS-Maf-2207
ENSMFAG00000045124.1
G7NWP5
EGM_00070
8
LLPS-Maf-3581
ENSMFAG00000032447.1
G7NUZ6
EGM_00596
9
LLPS-Maf-3818
ENSMFAG00000043405.1
G7NWZ3
EGM_00745
10
LLPS-Maf-1398
ENSMFAG00000041152.1
G7NXG8
EGM_01605
11
LLPS-Maf-1695
ENSMFAG00000006832.1
G7PFD8
EGM_02668
12
LLPS-Maf-1349
ENSMFAG00000045318.1
G7PI05
EGM_03483
13
LLPS-Maf-4661
ENSMFAG00000036172.1
G7PLB4
EGM_04267
14
LLPS-Maf-2453
ENSMFAG00000031522.1
G7PMY9
EGM_05117
15
LLPS-Maf-0507
ENSMFAG00000003827.1
G7PP85
EGM_05378
16
LLPS-Maf-3031
ENSMFAG00000030370.1
G7PPI1
EGM_05430
17
LLPS-Maf-3398
ENSMFAG00000035870.1
G7PRR0
EGM_06758
18
LLPS-Maf-4033
ENSMFAG00000038506.1
G7PTI9
EGM_07376
19
LLPS-Maf-3296
ENSMFAG00000003684.1
G7PT38
EGM_08257
20
LLPS-Maf-1311
ENSMFAG00000027055.1
G7PVI1
EGM_08529
21
LLPS-Maf-2470
ENSMFAG00000032332.1
G7PZY5
EGM_12055
22
LLPS-Maf-1810
ENSMFAG00000014606.1
G7PAW0
EGM_16815
23
LLPS-Maf-1471
ENSMFAG00000002750.1
G8F4K2
EGM_20453
24
LLPS-Maf-0389
ENSMFAG00000031561.1
G8F5C0
EGM_20824
25
LLPS-Maf-4734
ENSMFAG00000025611.1
G7PW44
ENOX1
26
LLPS-Maf-2561
ENSMFAG00000030017.1
G7PEB2
FAM53B
27
LLPS-Maf-2274
ENSMFAG00000031953.1
G7Q2N4
GATA1
28
LLPS-Maf-3802
ENSMFAG00000042967.1
Q8WNU4
IQCN
29
LLPS-Maf-1489
ENSMFAG00000041557.1
G7Q300
NONO
30
LLPS-Maf-2794
ENSMFAG00000033927.1
G7PP84
RBM4B
31
LLPS-Maf-2460
ENSMFAG00000030811.1
G7PWN1
ZNF24