Equus caballus      Paraspeckle


※ Paraspeckle introduction

    Paraspeckles are mammalian-specific nuclear bodies that often lie adjacent to splicing speckles, containing several multifunctional proteins, including PSF (PTB-associated splicing factor), p54nrb, PSP1andRBM14/CoAA/PSP2 (here- after referred to CoAA) (1), the long noncoding RNA NEAT1 assembles these protein components and is critical for paraspeckle formation. DIS3 was proved to be involved in controlling the formation of paraspeckles, nuclear bodies that are organized around NEAT1 lncRNA, whose short form was overexpressed in cells with mutated DIS3 (2). Paraspeckles regulate gene expression through a number of mechanisms, including sequestration of specific transcription factors and/or hyperedited mRNAs (3). Besides, RNA editing by the enzyme ADAR (Adenosine deaminase acting on RNA) was proved to occur in paraspeckles (4).

Reference
1. Chang, S. H., Chang, W. L., Lu, C. C., & Tarn, W. Y. (2014) Alanine repeats influence protein localization in splicing speckles and paraspeckles. Nucleic Acids Res, 42(22), 13788-13798. PMID: 25414336
2. Szczepinska, T., Kalisiak, K., Tomecki, R., Labno, A., Borowski, L. S., Kulinski, T. M., et al. (2015) DIS3 shapes the RNA polymerase II transcriptome in humans by degrading a variety of unwanted transcripts. Genome Res, 25(11), 1622-1633. PMID: 26294688
3. Adriaens, C., Standaert, L., Barra, J., Latil, M., Verfaillie, A., Kalev, P., et al. (2016) p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity. Nat Med, 22(8), 861-868. PMID: 27376578
4. Banerjee, A., Vest, K. E., Pavlath, G. K., & Corbett, A. H. (2017) Nuclear poly(A) binding protein 1 (PABPN1) and Matrin3 interact in muscle cells and regulate RNA processing. Nucleic Acids Res, 45(18), 10706-10725. PMID: 28977530


There are 32 genes.  Reviewed (0 or Unreviewed (32

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Eqc-0272
ENSECAG00000027944.1
2
LLPS-Eqc-1372
ENSECAG00000031050.1
3
LLPS-Eqc-1668
ENSECAG00000032748.1
4
LLPS-Eqc-4236
ENSECAG00000037888.1
5
LLPS-Eqc-0872
ENSECAG00000012902.2
F6SFH9
CHMP6
6
LLPS-Eqc-4275
ENSECAG00000015988.2
F6V9A2
CPSF6
7
LLPS-Eqc-1135
ENSECAG00000010965.2
F7DB64
CYBA
8
LLPS-Eqc-1646
ENSECAG00000011933.2
F6U8V0
DHX9
9
LLPS-Eqc-0881
ENSECAG00000023994.2
F6Y5X4
DIS3
10
LLPS-Eqc-2434
ENSECAG00000023538.2
F7CQJ1
ENOX1
11
LLPS-Eqc-1824
ENSECAG00000014260.2
F7AJ44
FOS
12
LLPS-Eqc-3183
ENSECAG00000022793.2
F6U8N0
HECTD3
13
LLPS-Eqc-0010
ENSECAG00000008676.2
F6YZ44
HNRNPA1
14
LLPS-Eqc-4115
ENSECAG00000010024.2
F7BCX4
IQCN
15
LLPS-Eqc-1441
ENSECAG00000010613.2
F6Q2H5
KLF4
16
LLPS-Eqc-0433
ENSECAG00000011017.2
F7ALF9
LMNB2
17
LLPS-Eqc-2268
ENSECAG00000008502.2
F6UBF6
NONO
18
LLPS-Eqc-3423
ENSECAG00000011652.2
F7BFS3
PABPN1
19
LLPS-Eqc-0693
ENSECAG00000017286.2
F7AH65
PSPC1
20
LLPS-Eqc-3699
ENSECAG00000022859.2
F6UPI5
RBM14
21
LLPS-Eqc-2458
ENSECAG00000022940.2
F6VSR3
RBM4
22
LLPS-Eqc-2926
ENSECAG00000022987.2
F6VSG0
RBM4B
23
LLPS-Eqc-3463
ENSECAG00000007600.2
F7E3W0
SCYL1
24
LLPS-Eqc-2099
ENSECAG00000000642.2
F7C177
SFPQ
25
LLPS-Eqc-1578
ENSECAG00000023542.2
F7C8E3
SH2B1
26
LLPS-Eqc-2757
ENSECAG00000017756.2
F6R3Q3
SRSF11
27
LLPS-Eqc-0335
ENSECAG00000008338.2
F6WAU6
TARDBP
28
LLPS-Eqc-0097
ENSECAG00000008126.2
P79892
TP53
29
LLPS-Eqc-2516
ENSECAG00000012127.2
F6RPP3
UVSSA
30
LLPS-Eqc-1979
ENSECAG00000020071.2
F7BTS0
XIAP
31
LLPS-Eqc-3242
ENSECAG00000022765.2
F6V686
ZC3H8
32
LLPS-Eqc-3296
ENSECAG00000028677.1
F7CRC8
ZNF24