Vigna angularis      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 47 genes.  Reviewed (0 or Unreviewed (47

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Via-0205
LR48_Vigan01g035500
A0A0L9TJR8
LR48_Vigan01g035500
2
LLPS-Via-0378
LR48_Vigan01g088900
A0A0L9TMF0
LR48_Vigan01g088900
3
LLPS-Via-1393
LR48_Vigan01g126800
A0A0L9TM90
LR48_Vigan01g126800
4
LLPS-Via-0652
LR48_Vigan01g131800
A0A0L9TME2
LR48_Vigan01g131800
5
LLPS-Via-0031
LR48_Vigan01g163100
A0A0L9TNE6
LR48_Vigan01g163100
6
LLPS-Via-2260
LR48_Vigan01g223400
A0A0L9TQ12
LR48_Vigan01g223400
7
LLPS-Via-1582
LR48_Vigan01g306300
A0A0L9TSX9
LR48_Vigan01g306300
8
LLPS-Via-2226
LR48_Vigan01g312000
A0A0L9TTS0
LR48_Vigan01g312000
9
LLPS-Via-0005
LR48_Vigan02g012700
A0A0L9TUC0
LR48_Vigan02g012700
10
LLPS-Via-1071
LR48_Vigan02g154300
A0A0L9TXS7
LR48_Vigan02g154300
11
LLPS-Via-1320
LR48_Vigan02g249600
A0A0L9U0Q2
LR48_Vigan02g249600
12
LLPS-Via-0437
LR48_Vigan02g256200
A0A0L9U149
LR48_Vigan02g256200
13
LLPS-Via-0793
LR48_Vigan02g264400
A0A0L9U272
LR48_Vigan02g264400
14
LLPS-Via-0292
LR48_Vigan03g177700
A0A0L9U6H8
LR48_Vigan03g177700
15
LLPS-Via-1223
LR48_Vigan03g197200
A0A0L9U721
LR48_Vigan03g197200
16
LLPS-Via-0692
LR48_Vigan03g284500
A0A0L9U9Q4
LR48_Vigan03g284500
17
LLPS-Via-0256
LR48_Vigan04g159600
A0A0L9UF81
LR48_Vigan04g159600
18
LLPS-Via-0422
LR48_Vigan05g021700
A0A0L9UIM6
LR48_Vigan05g021700
19
LLPS-Via-0250
LR48_Vigan05g052300
A0A0L9UK32
LR48_Vigan05g052300
20
LLPS-Via-0687
LR48_Vigan05g100900
A0A0L9UKI3
LR48_Vigan05g100900
21
LLPS-Via-0936
LR48_Vigan05g187600
A0A0L9UNH7
LR48_Vigan05g187600
22
LLPS-Via-0170
LR48_Vigan05g221300
A0A0L9UPE8
LR48_Vigan05g221300
23
LLPS-Via-1250
LR48_Vigan05g222800
A0A0L9UPF8
LR48_Vigan05g222800
24
LLPS-Via-1478
LR48_Vigan06g031600
A0A0L9UQ56
LR48_Vigan06g031600
25
LLPS-Via-0796
LR48_Vigan06g144000
A0A0L9UUC6
LR48_Vigan06g144000
26
LLPS-Via-1269
LR48_Vigan07g032900
A0A0L9UUS7
LR48_Vigan07g032900
27
LLPS-Via-1333
LR48_Vigan07g051100
A0A0L9UW42
LR48_Vigan07g051100
28
LLPS-Via-0069
LR48_Vigan07g071200
A0A0L9UW79
LR48_Vigan07g071200
29
LLPS-Via-2431
LR48_Vigan07g091700
A0A0L9UWR4
LR48_Vigan07g091700
30
LLPS-Via-0235
LR48_Vigan07g250800
A0A0L9V230
LR48_Vigan07g250800
31
LLPS-Via-0902
LR48_Vigan08g012700
A0A0L9V2E5
LR48_Vigan08g012700
32
LLPS-Via-1350
LR48_Vigan08g198200
A0A0L9V7V7
LR48_Vigan08g198200
33
LLPS-Via-0166
LR48_Vigan08g203100
A0A0L9V971
LR48_Vigan08g203100
34
LLPS-Via-1994
LR48_Vigan08g210800
A0A0L9V889
LR48_Vigan08g210800
35
LLPS-Via-1789
LR48_Vigan09g107800
A0A0L9VCP3
LR48_Vigan09g107800
36
LLPS-Via-0999
LR48_Vigan09g144700
A0A0L9VCQ0
LR48_Vigan09g144700
37
LLPS-Via-2086
LR48_Vigan09g233700
A0A0L9VFA0
LR48_Vigan09g233700
38
LLPS-Via-0703
LR48_Vigan09g252200
A0A0L9VFS9
LR48_Vigan09g252200
39
LLPS-Via-1318
LR48_Vigan1091s002800
A0A0L9TIK7
LR48_Vigan1091s002800
40
LLPS-Via-2183
LR48_Vigan10g159400
A0A0L9VLC5
LR48_Vigan10g159400
41
LLPS-Via-2356
LR48_Vigan10g197700
A0A0L9VM15
LR48_Vigan10g197700
42
LLPS-Via-1432
LR48_Vigan10g275600
A0A0L9VQ36
LR48_Vigan10g275600
43
LLPS-Via-0340
LR48_Vigan238s005100
A0A0L9T6K7
LR48_Vigan238s005100
44
LLPS-Via-0609
LR48_Vigan462s000700
A0A0L9TC78
LR48_Vigan462s000700
45
LLPS-Via-0807
LR48_Vigan50s005100
A0A0L9T455
LR48_Vigan50s005100
46
LLPS-Via-0905
LR48_Vigan561s007000
A0A0L9TDI1
LR48_Vigan561s007000
47
LLPS-Via-1013
LR48_Vigan609s003200
A0A0L9TE71
LR48_Vigan609s003200