Tursiops truncatus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 61 genes.  Reviewed (0 or Unreviewed (61

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Tut-0167
ENSTTRG00000000987.1
2
LLPS-Tut-0340
ENSTTRG00000017390.1
3
LLPS-Tut-0652
ENSTTRG00000007310.1
4
LLPS-Tut-0858
ENSTTRG00000005514.1
5
LLPS-Tut-0985
ENSTTRG00000010969.1
6
LLPS-Tut-1151
ENSTTRG00000011417.1
7
LLPS-Tut-0705
ENSTTRG00000016121.1
A0A2U4B3S3
ANXA10
8
LLPS-Tut-0934
ENSTTRG00000015875.1
A0A2U4CKR0
ARL6IP4
9
LLPS-Tut-2344
ENSTTRG00000006940.1
A0A2U3V501
CDC5L
10
LLPS-Tut-1473
ENSTTRG00000001085.1
A0A2U4BDY1
CDK1
11
LLPS-Tut-1122
ENSTTRG00000002877.1
A0A2U4AXF6
CDK7
12
LLPS-Tut-0300
ENSTTRG00000016739.1
A0A2U4C254
CTNNBL1
13
LLPS-Tut-0596
ENSTTRG00000007944.1
A0A2U3V001
DNAJB1
14
LLPS-Tut-1307
ENSTTRG00000012102.1
A0A2U3UZK9
DYRK3
15
LLPS-Tut-1127
ENSTTRG00000004659.1
A0A2U4ARM7
EGF
16
LLPS-Tut-1808
ENSTTRG00000001609.1
A0A2U4BXT4
EPAS1
17
LLPS-Tut-0780
ENSTTRG00000013963.1
A0A2U3V022
ERH
18
LLPS-Tut-2000
ENSTTRG00000006300.1
A0A2U4AEJ9
FAM76B
19
LLPS-Tut-1377
ENSTTRG00000017265.1
A0A2U4CB44
FRMD8
20
LLPS-Tut-1742
ENSTTRG00000016288.1
A0A2U3V6M7
FYTTD1
21
LLPS-Tut-2392
ENSTTRG00000003628.1
A0A2U4BSU0
GLI3
22
LLPS-Tut-0443
ENSTTRG00000016652.1
A0A2U4AAG1
GSK3B
23
LLPS-Tut-0260
ENSTTRG00000012558.1
A0A2U4ACD6
HIF1A
24
LLPS-Tut-0586
ENSTTRG00000015161.1
A0A2U4C9X3
HIPK2
25
LLPS-Tut-0995
ENSTTRG00000004505.1
A0A2U4CBH8
HNRNPA1
26
LLPS-Tut-0197
ENSTTRG00000000709.1
A0A2U4AMA3
HNRNPA2B1
27
LLPS-Tut-0451
ENSTTRG00000004906.1
A0A2U4BS49
HNRNPK
28
LLPS-Tut-0999
ENSTTRG00000001598.1
A0A2U3V502
HSPH1
29
LLPS-Tut-2152
ENSTTRG00000014759.1
A0A2U3V2R3
ILF2
30
LLPS-Tut-1371
ENSTTRG00000017099.1
A0A2U4APC1
LOC101323006
31
LLPS-Tut-1116
ENSTTRG00000013187.1
A0A2U4CI77
LOC101329867
32
LLPS-Tut-2234
ENSTTRG00000009644.1
A0A2U3V9S8
LOC101329893
33
LLPS-Tut-1148
ENSTTRG00000015142.1
A0A2U4CBJ4
LOC101330237
34
LLPS-Tut-1775
ENSTTRG00000012088.1
A0A2U4AQ19
LUC7L
35
LLPS-Tut-1851
ENSTTRG00000001035.1
A0A2U3VAM4
MAGOH
36
LLPS-Tut-2054
ENSTTRG00000016338.1
A0A2U4ANK7
NSRP1
37
LLPS-Tut-1346
ENSTTRG00000006600.1
A0A2U3ZYP2
NUAK2
38
LLPS-Tut-1924
ENSTTRG00000016881.1
A0A2U4B9N1
P2RY12
39
LLPS-Tut-0269
ENSTTRG00000010053.1
A0A2U4AMW1
PLRG1
40
LLPS-Tut-0601
ENSTTRG00000012476.1
A0A2U3V0A9
PRPF19
41
LLPS-Tut-0856
ENSTTRG00000003439.1
A0A2U4C940
PTBP3
42
LLPS-Tut-1496
ENSTTRG00000001344.1
A0A2U3V9D4
RBM17
43
LLPS-Tut-1369
ENSTTRG00000001500.1
A0A2U4CFF6
RBM23
44
LLPS-Tut-1912
ENSTTRG00000011394.1
A0A2U4C0K2
RNF151
45
LLPS-Tut-1013
ENSTTRG00000008220.1
A0A2U4ATK9
RNPS1
46
LLPS-Tut-1247
ENSTTRG00000009735.1
A0A2U4CRM6
SARNP
47
LLPS-Tut-1602
ENSTTRG00000008857.1
A0A2U4CB23
SF1
48
LLPS-Tut-0790
ENSTTRG00000001535.1
A0A2U3UZ04
SF3A1
49
LLPS-Tut-1298
ENSTTRG00000013519.1
A0A2U4BKF4
SF3A3
50
LLPS-Tut-1749
ENSTTRG00000008020.1
A0A2U4AHV2
SPOP
51
LLPS-Tut-1488
ENSTTRG00000013447.1
A0A2U3UZ23
SRSF3
52
LLPS-Tut-0694
ENSTTRG00000002572.1
A0A2U4BKU1
SRSF4
53
LLPS-Tut-1058
ENSTTRG00000014324.1
A0A2U3V5Q8
SRSF7
54
LLPS-Tut-0475
ENSTTRG00000000642.1
A0A2U4BND3
SUMO1
55
LLPS-Tut-0706
ENSTTRG00000014145.1
A0A2U4C6P7
TAF15
56
LLPS-Tut-2147
ENSTTRG00000004264.1
A0A2U4B1C6
TAP1
57
LLPS-Tut-1561
ENSTTRG00000013665.1
A0A2U4CGK0
TGFBR1
58
LLPS-Tut-0629
ENSTTRG00000008243.1
A0A2U4C8J3
TRA2B
59
LLPS-Tut-1204
ENSTTRG00000003816.1
A0A2U4BUI6
U2AF1L4
60
LLPS-Tut-0695
ENSTTRG00000017170.1
A0A2U4B9X1
U2SURP
61
LLPS-Tut-0829
ENSTTRG00000005083.1
A0A2U4ARR2
YTHDC1