Triticum urartu      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 44 genes.  Reviewed (0 or Unreviewed (44

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Tru-0331
TRIUR3_10094
T1LYB1
2
LLPS-Tru-0412
TRIUR3_32237
T1NNB4
3
LLPS-Tru-0603
TRIUR3_04003
T1LH53
4
LLPS-Tru-0729
TRIUR3_04697
T1LIZ0
5
LLPS-Tru-2070
TRIUR3_14282
T1M9N0
6
LLPS-Tru-0834
TRIUR3_01855
M7YCP3
TRIUR3_01855
7
LLPS-Tru-1017
TRIUR3_07950
M7ZBV4
TRIUR3_07950
8
LLPS-Tru-0459
TRIUR3_08239
M7ZTA4
TRIUR3_08239
9
LLPS-Tru-1189
TRIUR3_08847
M7ZU43
TRIUR3_08847
10
LLPS-Tru-1294
TRIUR3_09033
M7YJP4
TRIUR3_09033
11
LLPS-Tru-0342
TRIUR3_10124
M7ZI11
TRIUR3_10124
12
LLPS-Tru-2052
TRIUR3_10176
M7ZBG3
TRIUR3_10176
13
LLPS-Tru-1662
TRIUR3_11237
M7Z5B4
TRIUR3_11237
14
LLPS-Tru-1511
TRIUR3_12615
M7YRF5
TRIUR3_12615
15
LLPS-Tru-1137
TRIUR3_12826
M7ZBX5
TRIUR3_12826
16
LLPS-Tru-0783
TRIUR3_13506
M8APD0
TRIUR3_13506
17
LLPS-Tru-0975
TRIUR3_14296
M7ZXN7
TRIUR3_14296
18
LLPS-Tru-1014
TRIUR3_15977
M7ZD26
TRIUR3_15977
19
LLPS-Tru-0700
TRIUR3_16212
M7Z8H3
TRIUR3_16212
20
LLPS-Tru-0679
TRIUR3_17376
M7Z6B4
TRIUR3_17376
21
LLPS-Tru-0214
TRIUR3_18335
M8A322
TRIUR3_18335
22
LLPS-Tru-0572
TRIUR3_19966
M8AU47
TRIUR3_19966
23
LLPS-Tru-1644
TRIUR3_20038
M7Z362
TRIUR3_20038
24
LLPS-Tru-0686
TRIUR3_20042
M7Z2I3
TRIUR3_20042
25
LLPS-Tru-1496
TRIUR3_21069
M7ZU87
TRIUR3_21069
26
LLPS-Tru-1170
TRIUR3_21150
M8A8J9
TRIUR3_21150
27
LLPS-Tru-1561
TRIUR3_21531
M8A9H6
TRIUR3_21531
28
LLPS-Tru-0467
TRIUR3_21938
M7ZUW4
TRIUR3_21938
29
LLPS-Tru-0227
TRIUR3_25419
M7ZS79
TRIUR3_25419
30
LLPS-Tru-1232
TRIUR3_26306
M7Z6J3
TRIUR3_26306
31
LLPS-Tru-0277
TRIUR3_27113
M7ZTC2
TRIUR3_27113
32
LLPS-Tru-0208
TRIUR3_27152
M7ZRP9
TRIUR3_27152
33
LLPS-Tru-0962
TRIUR3_27391
M7YYT0
TRIUR3_27391
34
LLPS-Tru-0927
TRIUR3_28067
M7ZYI7
TRIUR3_28067
35
LLPS-Tru-0815
TRIUR3_29295
M7ZL45
TRIUR3_29295
36
LLPS-Tru-0995
TRIUR3_30346
M7ZSY6
TRIUR3_30346
37
LLPS-Tru-0500
TRIUR3_30492
M7YTC9
TRIUR3_30492
38
LLPS-Tru-0982
TRIUR3_31510
M8AW61
TRIUR3_31510
39
LLPS-Tru-0254
TRIUR3_32462
M7YB41
TRIUR3_32462
40
LLPS-Tru-0093
TRIUR3_32936
M7ZY87
TRIUR3_32936
41
LLPS-Tru-0460
TRIUR3_33131
M7ZZF2
TRIUR3_33131
42
LLPS-Tru-0529
TRIUR3_33757
M7ZJC1
TRIUR3_33757
43
LLPS-Tru-0170
TRIUR3_33865
M7Z031
TRIUR3_33865
44
LLPS-Tru-0654
TRIUR3_33964
M7ZX76
TRIUR3_33964