Trichoderma virens      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 35 genes.  Reviewed (0 or Unreviewed (35

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Trv-0068
TRIVIDRAFT_188272
G9MEC3
CDK9
2
LLPS-Trv-0633
TRIVIDRAFT_112589
G9N726
TRIVIDRAFT_112589
3
LLPS-Trv-1047
TRIVIDRAFT_113959
G9MPN1
TRIVIDRAFT_113959
4
LLPS-Trv-0366
TRIVIDRAFT_116107
G9MJ36
TRIVIDRAFT_116107
5
LLPS-Trv-1419
TRIVIDRAFT_127939
G9N9Q1
TRIVIDRAFT_127939
6
LLPS-Trv-0340
TRIVIDRAFT_145450
G9MLB1
TRIVIDRAFT_145450
7
LLPS-Trv-0588
TRIVIDRAFT_152392
G9MVK2
TRIVIDRAFT_152392
8
LLPS-Trv-0244
TRIVIDRAFT_161348
G9N7P6
TRIVIDRAFT_161348
9
LLPS-Trv-0817
TRIVIDRAFT_180017
G9MRI8
TRIVIDRAFT_180017
10
LLPS-Trv-0716
TRIVIDRAFT_185271
G9NDP5
TRIVIDRAFT_185271
11
LLPS-Trv-0763
TRIVIDRAFT_188750
G9MFY8
TRIVIDRAFT_188750
12
LLPS-Trv-1568
TRIVIDRAFT_19040
G9N9I6
TRIVIDRAFT_19040
13
LLPS-Trv-1339
TRIVIDRAFT_194675
G9N6V7
TRIVIDRAFT_194675
14
LLPS-Trv-0738
TRIVIDRAFT_209878
G9N182
TRIVIDRAFT_209878
15
LLPS-Trv-0446
TRIVIDRAFT_228771
G9NDH7
TRIVIDRAFT_228771
16
LLPS-Trv-0269
TRIVIDRAFT_231919
G9N6B1
TRIVIDRAFT_231919
17
LLPS-Trv-1374
TRIVIDRAFT_232656
G9NCZ0
TRIVIDRAFT_232656
18
LLPS-Trv-0489
TRIVIDRAFT_28192
G9MSE1
TRIVIDRAFT_28192
19
LLPS-Trv-1598
TRIVIDRAFT_38353
G9NCH4
TRIVIDRAFT_38353
20
LLPS-Trv-0214
TRIVIDRAFT_40565
G9N8X6
TRIVIDRAFT_40565
21
LLPS-Trv-0690
TRIVIDRAFT_42986
G9N776
TRIVIDRAFT_42986
22
LLPS-Trv-0496
TRIVIDRAFT_44275
G9N2P6
TRIVIDRAFT_44275
23
LLPS-Trv-0067
TRIVIDRAFT_48361
G9MYX0
TRIVIDRAFT_48361
24
LLPS-Trv-0429
TRIVIDRAFT_56219
G9NDH8
TRIVIDRAFT_56219
25
LLPS-Trv-0722
TRIVIDRAFT_70022
G9MX82
TRIVIDRAFT_70022
26
LLPS-Trv-0953
TRIVIDRAFT_72103
G9MKW9
TRIVIDRAFT_72103
27
LLPS-Trv-0571
TRIVIDRAFT_73199
G9MDX4
TRIVIDRAFT_73199
28
LLPS-Trv-1161
TRIVIDRAFT_74503
G9NCU9
TRIVIDRAFT_74503
29
LLPS-Trv-0616
TRIVIDRAFT_77634
G9MYK4
TRIVIDRAFT_77634
30
LLPS-Trv-1466
TRIVIDRAFT_79134
G9MKU6
TRIVIDRAFT_79134
31
LLPS-Trv-0646
TRIVIDRAFT_79448
G9MES2
TRIVIDRAFT_79448
32
LLPS-Trv-0673
TRIVIDRAFT_79964
G9NDH6
TRIVIDRAFT_79964
33
LLPS-Trv-0469
TRIVIDRAFT_86434
G9MFV9
TRIVIDRAFT_86434
34
LLPS-Trv-1372
TRIVIDRAFT_89472
G9MQ36
TRIVIDRAFT_89472
35
LLPS-Trv-0186
TRIVIDRAFT_89866
G9MZF2
TRIVIDRAFT_89866