Trichoderma reesei      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 31 genes.  Reviewed (0 or Unreviewed (31

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Trr-0583
TRIREDRAFT_74400
G0R795
gsk3
2
LLPS-Trr-1569
TRIREDRAFT_73564
G0R9A0
psa3
3
LLPS-Trr-0776
TRIREDRAFT_104601
G0RBB9
TRIREDRAFT_104601
4
LLPS-Trr-0225
TRIREDRAFT_105351
G0RE64
TRIREDRAFT_105351
5
LLPS-Trr-1177
TRIREDRAFT_112475
G0RX54
TRIREDRAFT_112475
6
LLPS-Trr-1423
TRIREDRAFT_122864
G0RPZ0
TRIREDRAFT_122864
7
LLPS-Trr-0653
TRIREDRAFT_21784
G0RD03
TRIREDRAFT_21784
8
LLPS-Trr-0160
TRIREDRAFT_22472
G0RLC6
TRIREDRAFT_22472
9
LLPS-Trr-0569
TRIREDRAFT_22660
G0RMK9
TRIREDRAFT_22660
10
LLPS-Trr-0219
TRIREDRAFT_33815
G0RPT3
TRIREDRAFT_33815
11
LLPS-Trr-0274
TRIREDRAFT_37761
G0RE55
TRIREDRAFT_37761
12
LLPS-Trr-0444
TRIREDRAFT_40945
G0RE54
TRIREDRAFT_40945
13
LLPS-Trr-0316
TRIREDRAFT_44960
G0R9S1
TRIREDRAFT_44960
14
LLPS-Trr-0853
TRIREDRAFT_50712
G0RR65
TRIREDRAFT_50712
15
LLPS-Trr-0968
TRIREDRAFT_53848
G0R6P6
TRIREDRAFT_53848
16
LLPS-Trr-1113
TRIREDRAFT_5407
G0RTB9
TRIREDRAFT_5407
17
LLPS-Trr-1184
TRIREDRAFT_57391
G0RDD5
TRIREDRAFT_57391
18
LLPS-Trr-1118
TRIREDRAFT_57869
G0RCU1
TRIREDRAFT_57869
19
LLPS-Trr-0502
TRIREDRAFT_59105
G0RFD1
TRIREDRAFT_59105
20
LLPS-Trr-0667
TRIREDRAFT_62063
G0RJD7
TRIREDRAFT_62063
21
LLPS-Trr-0642
TRIREDRAFT_62120
G0RJH7
TRIREDRAFT_62120
22
LLPS-Trr-0032
TRIREDRAFT_63624
G0RM78
TRIREDRAFT_63624
23
LLPS-Trr-0612
TRIREDRAFT_66128
G0RQI7
TRIREDRAFT_66128
24
LLPS-Trr-1635
TRIREDRAFT_75428
G0RCD2
TRIREDRAFT_75428
25
LLPS-Trr-1353
TRIREDRAFT_76191
G0RE53
TRIREDRAFT_76191
26
LLPS-Trr-1124
TRIREDRAFT_76795
G0RFY8
TRIREDRAFT_76795
27
LLPS-Trr-0799
TRIREDRAFT_77209
G0RHL9
TRIREDRAFT_77209
28
LLPS-Trr-0522
TRIREDRAFT_78109
G0RJX8
TRIREDRAFT_78109
29
LLPS-Trr-0349
TRIREDRAFT_78939
G0RMA2
TRIREDRAFT_78939
30
LLPS-Trr-0176
TRIREDRAFT_81861
G0RV11
TRIREDRAFT_81861
31
LLPS-Trr-0198
TRIREDRAFT_82425
G0RWU1
TRIREDRAFT_82425