Tetraodon nigroviridis      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 99 genes.  Reviewed (0 or Unreviewed (99

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Ten-0066
ENSTNIG00000017210.1
H3DIK3
2
LLPS-Ten-0105
ENSTNIG00000019737.1
H3DR39
3
LLPS-Ten-0135
ENSTNIG00000007510.1
H3CPY5
4
LLPS-Ten-0148
ENSTNIG00000013026.1
H3D665
5
LLPS-Ten-0157
ENSTNIG00000014279.1
H3D9V2
6
LLPS-Ten-0220
ENSTNIG00000018951.1
H3DNP0
7
LLPS-Ten-0223
ENSTNIG00000008514.1
H3CSX0
8
LLPS-Ten-0292
ENSTNIG00000011303.1
H3D156
9
LLPS-Ten-0330
ENSTNIG00000015318.1
H3DCY8
10
LLPS-Ten-0344
ENSTNIG00000014008.1
H3D925
11
LLPS-Ten-0346
ENSTNIG00000012767.1
H3D5F1
12
LLPS-Ten-0360
ENSTNIG00000000115.1
H3C410
13
LLPS-Ten-0445
ENSTNIG00000007173.1
H3CNZ2
14
LLPS-Ten-0561
ENSTNIG00000008329.1
H3CSC5
15
LLPS-Ten-0565
ENSTNIG00000017455.1
H3DJA2
16
LLPS-Ten-0594
ENSTNIG00000009177.1
H3CUV3
17
LLPS-Ten-0597
ENSTNIG00000011331.1
H3D188
18
LLPS-Ten-0599
ENSTNIG00000000697.1
H3BZ85
19
LLPS-Ten-0611
ENSTNIG00000003360.1
H3CCH5
20
LLPS-Ten-0697
ENSTNIG00000000879.1
H3C3I4
21
LLPS-Ten-0751
ENSTNIG00000005005.1
H3CHE3
22
LLPS-Ten-0884
ENSTNIG00000016909.1
H3DHN3
23
LLPS-Ten-0890
ENSTNIG00000014219.1
H3D9P1
24
LLPS-Ten-0927
ENSTNIG00000016876.1
H3DHJ7
25
LLPS-Ten-0967
ENSTNIG00000003208.1
H3CC16
26
LLPS-Ten-1026
ENSTNIG00000011595.1
H3D207
27
LLPS-Ten-1043
ENSTNIG00000016762.1
H3DH80
28
LLPS-Ten-1081
ENSTNIG00000009853.1
H3CWV8
29
LLPS-Ten-1092
ENSTNIG00000000225.1
H3C4H6
30
LLPS-Ten-1112
ENSTNIG00000017616.1
H3DJR7
31
LLPS-Ten-1191
ENSTNIG00000019254.1
H3DPK6
32
LLPS-Ten-1220
ENSTNIG00000017914.1
H3DKM8
33
LLPS-Ten-1229
ENSTNIG00000004162.1
H3CEV9
34
LLPS-Ten-1241
ENSTNIG00000014643.1
H3DAX9
35
LLPS-Ten-1469
ENSTNIG00000016428.1
H3DG82
36
LLPS-Ten-1509
ENSTNIG00000010358.1
H3CYC9
37
LLPS-Ten-1571
ENSTNIG00000007732.1
H3CQL5
38
LLPS-Ten-1589
ENSTNIG00000012841.1
H3D5M7
39
LLPS-Ten-1645
ENSTNIG00000007672.1
H3CQF4
40
LLPS-Ten-1646
ENSTNIG00000010797.1
H3CZN5
41
LLPS-Ten-1690
ENSTNIG00000017339.1
H3DIY3
42
LLPS-Ten-1713
ENSTNIG00000003789.1
H3CDR6
43
LLPS-Ten-1719
ENSTNIG00000014650.1
H3DAY6
44
LLPS-Ten-1734
ENSTNIG00000006691.1
H3CMJ1
45
LLPS-Ten-1778
ENSTNIG00000006005.1
H3BZN4
46
LLPS-Ten-1800
ENSTNIG00000018010.1
H3DKX7
47
LLPS-Ten-1816
ENSTNIG00000006892.1
H3C0P7
48
LLPS-Ten-1818
ENSTNIG00000016665.1
H3DGX8
49
LLPS-Ten-1830
ENSTNIG00000001280.1
H3C6P7
50
LLPS-Ten-1884
ENSTNIG00000012432.1
H3D4G5
51
LLPS-Ten-1888
ENSTNIG00000005519.1
H3CIY9
52
LLPS-Ten-1895
ENSTNIG00000003176.1
H3CBY3
53
LLPS-Ten-1940
ENSTNIG00000013668.1
H3D827
54
LLPS-Ten-2001
ENSTNIG00000016100.1
H3DF97
55
LLPS-Ten-2019
ENSTNIG00000013933.1
H3D8U7
56
LLPS-Ten-2032
ENSTNIG00000002491.1
H3C9W9
57
LLPS-Ten-2069
ENSTNIG00000018119.1
H3DL87
58
LLPS-Ten-2072
ENSTNIG00000016223.1
H3DFM2
59
LLPS-Ten-2078
ENSTNIG00000004820.1
H3CGV3
60
LLPS-Ten-2096
ENSTNIG00000014468.1
H3DAE7
61
LLPS-Ten-2138
ENSTNIG00000008067.1
H3CRK7
62
LLPS-Ten-2146
ENSTNIG00000015407.1
H3DD82
63
LLPS-Ten-2191
ENSTNIG00000004317.1
H3CFC3
64
LLPS-Ten-2207
ENSTNIG00000002999.1
H3CBE6
65
LLPS-Ten-2267
ENSTNIG00000012159.1
H3D3N5
66
LLPS-Ten-2342
ENSTNIG00000005369.1
H3CIH4
67
LLPS-Ten-2448
ENSTNIG00000014090.1
H3D9A7
68
LLPS-Ten-2541
ENSTNIG00000014618.1
H3DAV5
69
LLPS-Ten-2565
ENSTNIG00000015765.1
H3DE98
70
LLPS-Ten-2593
ENSTNIG00000009984.1
H3CX93
71
LLPS-Ten-2639
ENSTNIG00000007811.1
H3CQU7
72
LLPS-Ten-2755
ENSTNIG00000011257.1
H3D110
73
LLPS-Ten-2806
ENSTNIG00000013243.1
H3D6T5
74
LLPS-Ten-2906
ENSTNIG00000015834.1
H3DEH5
75
LLPS-Ten-2911
ENSTNIG00000002735.1
H3CAM3
76
LLPS-Ten-2958
ENSTNIG00000007700.1
H3CQI3
77
LLPS-Ten-3034
ENSTNIG00000019433.1
H3DQ41
78
LLPS-Ten-3091
ENSTNIG00000009546.1
H3CVY5
79
LLPS-Ten-3123
ENSTNIG00000010530.1
H3CYV7
80
LLPS-Ten-3147
ENSTNIG00000009800.1
H3CWQ4
81
LLPS-Ten-3325
ENSTNIG00000011789.1
H3D2K5
82
LLPS-Ten-3482
ENSTNIG00000016161.1
H3DFF8
83
LLPS-Ten-3806
ENSTNIG00000001368.1
H3C3N4
84
LLPS-Ten-3812
ENSTNIG00000008270.1
H3CS66
85
LLPS-Ten-0642
ENSTNIG00000017760.1
H3DK65
AGO2
86
LLPS-Ten-3543
ENSTNIG00000006372.1
H3CLK7
CDKL5 (1 of many)
87
LLPS-Ten-2385
ENSTNIG00000003045.1
H3CBJ3
ERH
88
LLPS-Ten-1948
ENSTNIG00000011694.1
H3D2A7
EZH1
89
LLPS-Ten-1953
ENSTNIG00000018850.1
H3DND6
FGFR1
90
LLPS-Ten-0984
ENSTNIG00000005509.1
Q4SZ64
GSTENG00009993001
91
LLPS-Ten-1848
ENSTNIG00000007116.1
Q4SRZ8
GSTENG00013681001
92
LLPS-Ten-0602
ENSTNIG00000007213.1
Q4SRL8
GSTENG00013853001
93
LLPS-Ten-0546
ENSTNIG00000008392.1
Q4SM21
GSTENG00015969001
94
LLPS-Ten-0089
ENSTNIG00000014186.1
Q4RZG0
GSTENG00026504001
95
LLPS-Ten-2312
ENSTNIG00000002426.1
Q4RH34
GSTENG00034533001
96
LLPS-Ten-1223
ENSTNIG00000009753.1
H3CWK6
RNPS1
97
LLPS-Ten-0750
ENSTNIG00000018925.1
H3DNL3
SPOP
98
LLPS-Ten-1547
ENSTNIG00000003205.1
H3CC13
SUMO1
99
LLPS-Ten-2160
ENSTNIG00000008106.1
H3CRP7
U2AF2