Takifugu rubripes      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 99 genes.  Reviewed (0 or Unreviewed (99

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Tar-0016
ENSTRUG00000010142.2
H2TLH8
2
LLPS-Tar-1932
ENSTRUG00000007370.2
H2T0M8
ago2
3
LLPS-Tar-1563
ENSTRUG00000005761.2
H2SNM3
akap17a
4
LLPS-Tar-1156
ENSTRUG00000008828.2
H2TBZ6
ALYREF
5
LLPS-Tar-0315
ENSTRUG00000010106.2
H2TL98
arl6ip4
6
LLPS-Tar-0821
ENSTRUG00000024633.1
A0A3B5KKT1
bcas2
7
LLPS-Tar-1569
ENSTRUG00000012690.2
H2U5B3
carm1
8
LLPS-Tar-1501
ENSTRUG00000000673.2
H2RN95
casc3
9
LLPS-Tar-1075
ENSTRUG00000012879.2
H2U6Q3
ccnl1
10
LLPS-Tar-0056
ENSTRUG00000006648.2
A0A3B5K703
cdc5l
11
LLPS-Tar-0832
ENSTRUG00000003059.2
H2S418
cdk1
12
LLPS-Tar-3266
ENSTRUG00000010233.2
H2TM74
cdk7
13
LLPS-Tar-1531
ENSTRUG00000008976.2
H2TD26
cdk9
14
LLPS-Tar-3218
ENSTRUG00000012621.2
H2U4T7
CDKL5
15
LLPS-Tar-0594
ENSTRUG00000005262.2
H2SJN5
cop1
16
LLPS-Tar-1966
ENSTRUG00000025499.1
A0A3B5KVB5
csnk1a1l
17
LLPS-Tar-0392
ENSTRUG00000010777.2
H2TR89
ctnnbl1
18
LLPS-Tar-0120
ENSTRUG00000008878.2
H2TCC6
ddx46
19
LLPS-Tar-1438
ENSTRUG00000013594.2
H2UCQ5
dgcr8
20
LLPS-Tar-2098
ENSTRUG00000005217.2
H2SJF0
dnajb1
21
LLPS-Tar-0870
ENSTRUG00000013840.2
H2UEL3
dnajc17
22
LLPS-Tar-3061
ENSTRUG00000015626.2
A0A3B5K3Z4
egf
23
LLPS-Tar-3871
ENSTRUG00000003522.2
H2S793
erh
24
LLPS-Tar-2354
ENSTRUG00000015011.2
H2UN46
EZH1
25
LLPS-Tar-2116
ENSTRUG00000015574.2
H2US88
fam76b
26
LLPS-Tar-3022
ENSTRUG00000009193.2
H2TEN3
fam83h
27
LLPS-Tar-3307
ENSTRUG00000003759.2
H2S8V4
fancd2
28
LLPS-Tar-2110
ENSTRUG00000000347.2
H2RKZ2
fanci
29
LLPS-Tar-3310
ENSTRUG00000013524.2
H2UC33
fbxl18
30
LLPS-Tar-2994
ENSTRUG00000016527.2
H2UZ73
FGFR1
31
LLPS-Tar-1695
ENSTRUG00000000948.2
H2RQ30
frmd8
32
LLPS-Tar-0376
ENSTRUG00000008895.2
H2TCH6
fyttd1
33
LLPS-Tar-3544
ENSTRUG00000007692.2
H2T351
gli3
34
LLPS-Tar-3029
ENSTRUG00000002302.2
H2RYS5
gsk3b
35
LLPS-Tar-1255
ENSTRUG00000012093.2
H2U0Z2
hif1a
36
LLPS-Tar-3737
ENSTRUG00000008330.2
H2T850
hipk2
37
LLPS-Tar-2327
ENSTRUG00000010659.2
H2TQE9
hnrnpk
38
LLPS-Tar-1128
ENSTRUG00000004888.2
A0A3B5JX30
ilf2
39
LLPS-Tar-0857
ENSTRUG00000010961.2
H2TSL9
ilf3
40
LLPS-Tar-1963
ENSTRUG00000006013.2
H2SQE1
ivns1abp
41
LLPS-Tar-0586
ENSTRUG00000008630.2
H2TAF8
kpna2
42
LLPS-Tar-0705
ENSTRUG00000008563.2
H2T9X1
LOC101062698
43
LLPS-Tar-1045
ENSTRUG00000009138.2
A0A3B5KGU7
LOC101063291
44
LLPS-Tar-0011
ENSTRUG00000024747.1
H2RYZ9
LOC101063964
45
LLPS-Tar-2825
ENSTRUG00000000039.2
H2RIX9
LOC101065025
46
LLPS-Tar-0610
ENSTRUG00000009316.2
H2TFI2
LOC101065611
47
LLPS-Tar-2383
ENSTRUG00000017058.2
H2V3B7
LOC101066595
48
LLPS-Tar-2126
ENSTRUG00000019812.1
A0A3B5KJS4
LOC101066976
49
LLPS-Tar-2599
ENSTRUG00000000284.2
H2RKG4
LOC101070020
50
LLPS-Tar-2060
ENSTRUG00000018104.2
H2VAV4
LOC101070858
51
LLPS-Tar-0579
ENSTRUG00000002376.2
H2RZC0
LOC101071628
52
LLPS-Tar-0523
ENSTRUG00000011335.2
H2TV99
LOC101071804
53
LLPS-Tar-1264
ENSTRUG00000005571.2
A0A3B5KIP3
LOC101073809
54
LLPS-Tar-1034
ENSTRUG00000024325.1
A0A3B5KD16
LOC101074868
55
LLPS-Tar-3798
ENSTRUG00000019985.1
H2UBI6
LOC101075541
56
LLPS-Tar-1683
ENSTRUG00000021863.1
H2S5K6
LOC101080055
57
LLPS-Tar-3258
ENSTRUG00000011891.2
A0A3B5JZZ1
LOC101080136
58
LLPS-Tar-0317
ENSTRUG00000019967.1
A0A3B5K730
LOC105416746
59
LLPS-Tar-1016
ENSTRUG00000024551.1
A0A3B5KHC1
LOC105417591
60
LLPS-Tar-0118
ENSTRUG00000023965.1
A0A3B5K3T9
LOC105417833
61
LLPS-Tar-2686
ENSTRUG00000016335.2
H2UXU0
luc7l
62
LLPS-Tar-3147
ENSTRUG00000008031.2
H2T5Q9
nagk
63
LLPS-Tar-0181
ENSTRUG00000005554.2
H2SLS9
nono
64
LLPS-Tar-1312
ENSTRUG00000009769.2
H2TIP4
nosip
65
LLPS-Tar-1689
ENSTRUG00000000226.2
H2RK32
nsrp1
66
LLPS-Tar-2432
ENSTRUG00000023948.1
A0A3B5KLN0
nuak2
67
LLPS-Tar-2989
ENSTRUG00000003379.2
H2S698
ogg1
68
LLPS-Tar-1628
ENSTRUG00000023664.1
A0A3B5JVY1
pabpn1
69
LLPS-Tar-0837
ENSTRUG00000006373.2
H2ST20
plrg1
70
LLPS-Tar-1724
ENSTRUG00000023243.1
A0A3B5KQU5
pnn
71
LLPS-Tar-1882
ENSTRUG00000021606.1
H2V970
PPIG
72
LLPS-Tar-0443
ENSTRUG00000008502.2
H2T9G0
prpf19
73
LLPS-Tar-0746
ENSTRUG00000015906.2
H2UUP5
prpf8
74
LLPS-Tar-1809
ENSTRUG00000008340.2
A0A3B5K9F1
psma3
75
LLPS-Tar-1481
ENSTRUG00000011360.2
A0A3B5KGS0
ptbp1
76
LLPS-Tar-2492
ENSTRUG00000018338.2
H2VCG4
rapgef1
77
LLPS-Tar-1150
ENSTRUG00000010698.2
A0A3B5KPA8
rbm17
78
LLPS-Tar-0942
ENSTRUG00000001699.2
H2RUS8
rbmx2
79
LLPS-Tar-1847
ENSTRUG00000006988.2
A0A3B5KQ33
rnf151
80
LLPS-Tar-1342
ENSTRUG00000008602.2
A0A3B5K2U2
RNPS1
81
LLPS-Tar-0320
ENSTRUG00000009497.2
H2TGR1
sarnp
82
LLPS-Tar-1907
ENSTRUG00000006118.2
H2SR29
sf3a1
83
LLPS-Tar-3828
ENSTRUG00000009045.2
H2TDJ6
sf3a2
84
LLPS-Tar-0580
ENSTRUG00000009089.2
H2TDV7
sf3a3
85
LLPS-Tar-1545
ENSTRUG00000015534.2
H2URZ8
sf3b1
86
LLPS-Tar-2453
ENSTRUG00000009202.2
H2TEQ8
snrnp70
87
LLPS-Tar-1769
ENSTRUG00000009703.2
H2TI81
snrpa
88
LLPS-Tar-1957
ENSTRUG00000000065.2
H2RJ37
snrpa1
89
LLPS-Tar-1402
ENSTRUG00000009060.2
H2TDM7
snrpb2
90
LLPS-Tar-2567
ENSTRUG00000001512.2
H2RTM1
SPOP
91
LLPS-Tar-3545
ENSTRUG00000010529.2
H2TPI2
srsf7
92
LLPS-Tar-2090
ENSTRUG00000015348.2
H2UQK9
stat3
93
LLPS-Tar-1392
ENSTRUG00000019611.1
A0A3B5KAP8
sumo1
94
LLPS-Tar-0023
ENSTRUG00000004751.2
H2SFY4
tgfbr1
95
LLPS-Tar-0395
ENSTRUG00000015168.2
H2UP78
tra2b
96
LLPS-Tar-2874
ENSTRUG00000001224.2
H2RRT4
ttc14
97
LLPS-Tar-0310
ENSTRUG00000005514.2
H2SLG6
u2af2
98
LLPS-Tar-1450
ENSTRUG00000017810.2
H2V8W2
u2surp
99
LLPS-Tar-3950
ENSTRUG00000015099.2
H2UNP8
znf131