Sporisorium reilianum      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 36 genes.  Reviewed (0 or Unreviewed (36

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Spr-0261
sr10343
E6ZTW9
sr10343
2
LLPS-Spr-0607
sr10436.2
E6ZU09
sr10436.2
3
LLPS-Spr-0338
sr10465
E6ZU30
sr10465
4
LLPS-Spr-0817
sr10646
E6ZY41
sr10646
5
LLPS-Spr-1286
sr11452
E6ZJJ9
sr11452
6
LLPS-Spr-0179
sr11657
E6ZK54
sr11657
7
LLPS-Spr-0190
sr11838
E6ZKW9
sr11838
8
LLPS-Spr-1405
sr12166
E6ZSR2
sr12166
9
LLPS-Spr-1317
sr12301
E6ZT47
sr12301
10
LLPS-Spr-1387
sr12409
E6ZTF6
sr12409
11
LLPS-Spr-0341
sr12608
E6ZWZ5
sr12608
12
LLPS-Spr-0516
sr12752
E6ZXD9
sr12752
13
LLPS-Spr-0299
sr12759
E6ZXE5
sr12759
14
LLPS-Spr-0151
sr13153
E6ZYY8
sr13153
15
LLPS-Spr-1390
sr13605
E6ZV88
sr13605
16
LLPS-Spr-1371
sr13692
E7A0M1
sr13692
17
LLPS-Spr-0386
sr13746
E7A0S6
sr13746
18
LLPS-Spr-0775
sr13911
E7A194
sr13911
19
LLPS-Spr-0853
sr14614
E6ZM25
sr14614
20
LLPS-Spr-0703
sr14790
E6ZMP4
sr14790
21
LLPS-Spr-0281
sr15297
E6ZPS1
sr15297
22
LLPS-Spr-0276
sr15472
E6ZP55
sr15472
23
LLPS-Spr-0403
sr15542
E6ZPC9
sr15542
24
LLPS-Spr-0601
sr15594
E6ZR18
sr15594
25
LLPS-Spr-0536
sr15648
E6ZR72
sr15648
26
LLPS-Spr-0889
sr15649
E6ZR73
sr15649
27
LLPS-Spr-1146
sr15778
E6ZQ06
sr15778
28
LLPS-Spr-0829
sr15832
E6ZQ60
sr15832
29
LLPS-Spr-0239
sr15877
E6ZQA5
sr15877
30
LLPS-Spr-0098
sr16269
E6ZRZ2
sr16269
31
LLPS-Spr-0828
sr16349
E6ZSD7
sr16349
32
LLPS-Spr-0611
sr16422
E6ZSL0
sr16422
33
LLPS-Spr-0460
sr16480
E6ZUJ4
sr16480
34
LLPS-Spr-0577
sr16505
E6ZUL9
sr16505
35
LLPS-Spr-0543
sr16752
E6ZVT6
sr16752
36
LLPS-Spr-1554
sr16829
E6ZWG5
sr16829