Solanum tuberosum      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 53 genes.  Reviewed (0 or Unreviewed (53

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Sot-0117
PGSC0003DMG400008452
M1AFP3
2
LLPS-Sot-0198
PGSC0003DMG400000840
M0ZJS3
3
LLPS-Sot-0362
PGSC0003DMG400014166
M1B451
4
LLPS-Sot-0548
PGSC0003DMG400008680
M1AGM3
5
LLPS-Sot-0787
PGSC0003DMG400009246
M1AJ58
6
LLPS-Sot-0840
PGSC0003DMG401028079
M1CPT3
7
LLPS-Sot-1317
PGSC0003DMG400035146
M1D9T2
8
LLPS-Sot-1476
PGSC0003DMG400011332
M1ASV5
9
LLPS-Sot-1604
PGSC0003DMG401029567
M1CW32
10
LLPS-Sot-0938
PGSC0003DMG400011240
M1ASG1
102577454
11
LLPS-Sot-1702
PGSC0003DMG400031389
M1D3Q8
102578618
12
LLPS-Sot-2240
PGSC0003DMG400003047
M0ZTN8
102579355
13
LLPS-Sot-1075
PGSC0003DMG400009079
M1AID5
102580192
14
LLPS-Sot-0151
PGSC0003DMG400028108
M1CPW5
102581342
15
LLPS-Sot-1461
PGSC0003DMG400024759
M1CB21
102581715
16
LLPS-Sot-1083
PGSC0003DMG400026319
M1CHP4
102582109
17
LLPS-Sot-0323
PGSC0003DMG400028106
M1CPW3
102582680
18
LLPS-Sot-0311
PGSC0003DMG401012560
M1AXV5
102583092
19
LLPS-Sot-0152
PGSC0003DMG400008918
M1AHN6
102583474
20
LLPS-Sot-0230
PGSC0003DMG400000344
M0ZHK4
102584094
21
LLPS-Sot-1435
PGSC0003DMG400003874
M0ZX29
102584531
22
LLPS-Sot-0479
PGSC0003DMG400028736
M1CSW4
102586113
23
LLPS-Sot-0103
PGSC0003DMG400020476
M1BTY2
102587835
24
LLPS-Sot-1502
PGSC0003DMG400033575
M1D738
102588041
25
LLPS-Sot-2017
PGSC0003DMG400027397
M1CM87
102588086
26
LLPS-Sot-0166
PGSC0003DMG400006298
M1A748
102588722
27
LLPS-Sot-0432
PGSC0003DMG400018195
M1BJS1
102588766
28
LLPS-Sot-0794
PGSC0003DMG400011500
M1ATK6
102589616
29
LLPS-Sot-1158
PGSC0003DMG400026283
M1CHJ6
102590452
30
LLPS-Sot-0824
PGSC0003DMG401001724
M0ZNA1
102590794
31
LLPS-Sot-0714
PGSC0003DMG400007322
M1ABB0
102591518
32
LLPS-Sot-1580
PGSC0003DMG400016158
M1BBS3
102591574
33
LLPS-Sot-0643
PGSC0003DMG400012334
M1AWX7
102591981
34
LLPS-Sot-2072
PGSC0003DMG400019729
M1BQV9
102592227
35
LLPS-Sot-1388
PGSC0003DMG400013893
M1B388
102592355
36
LLPS-Sot-1616
PGSC0003DMG400019621
M1BQD5
102592648
37
LLPS-Sot-0439
PGSC0003DMG400034096
M1D7T4
102592748
38
LLPS-Sot-1249
PGSC0003DMG400011402
M1AT81
102592958
39
LLPS-Sot-2264
PGSC0003DMG400005636
M1A438
102592972
40
LLPS-Sot-1768
PGSC0003DMG400016798
M1BED0
102595428
41
LLPS-Sot-0282
PGSC0003DMG400027986
M1CPI4
102596503
42
LLPS-Sot-2024
PGSC0003DMG400029778
M1CX12
102599072
43
LLPS-Sot-1384
PGSC0003DMG400021605
M1BY90
102599679
44
LLPS-Sot-0234
PGSC0003DMG400046756
M1E033
102600204
45
LLPS-Sot-1560
PGSC0003DMG400004585
M0ZZY5
102600584
46
LLPS-Sot-0167
PGSC0003DMG400017196
M1BFY0
102600710
47
LLPS-Sot-1794
PGSC0003DMG400016922
M1BEW5
102601577
48
LLPS-Sot-0467
PGSC0003DMG400014893
M1B731
102601882
49
LLPS-Sot-1217
PGSC0003DMG400007237
M1AAZ5
102602752
50
LLPS-Sot-1051
PGSC0003DMG400022347
M1C192
102602935
51
LLPS-Sot-1361
PGSC0003DMG400021191
M1BWL6
102603413
52
LLPS-Sot-1429
PGSC0003DMG400019339
M1BPB5
102604071
53
LLPS-Sot-0305
PGSC0003DMG400005659
M1A475
102605698