Solanum lycopersicum      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 53 genes.  Reviewed (0 or Unreviewed (53

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Sol-0001
Solyc05g013773.1
2
LLPS-Sol-0003
Solyc08g074440.3
3
LLPS-Sol-0007
Solyc11g018510.2
4
LLPS-Sol-0071
Solyc04g005820.3
5
LLPS-Sol-0082
Solyc01g105140.3
6
LLPS-Sol-0098
Solyc12g098700.2
7
LLPS-Sol-0149
Solyc01g097110.2
8
LLPS-Sol-0273
Solyc01g104560.3
9
LLPS-Sol-0323
Solyc11g009090.2
10
LLPS-Sol-0376
Solyc04g005690.3
11
LLPS-Sol-0410
Solyc02g083320.3
12
LLPS-Sol-0450
Solyc03g025280.3
13
LLPS-Sol-0537
Solyc01g068580.3
14
LLPS-Sol-0595
Solyc09g090660.3
15
LLPS-Sol-0621
Solyc07g008880.3
16
LLPS-Sol-0636
Solyc02g079400.3
17
LLPS-Sol-0644
Solyc12g008750.2
18
LLPS-Sol-0657
Solyc03g071560.3
19
LLPS-Sol-0665
Solyc12g005950.2
20
LLPS-Sol-0809
Solyc03g093350.3
21
LLPS-Sol-0814
Solyc12g062870.2
22
LLPS-Sol-0881
Solyc09g008470.3
23
LLPS-Sol-0892
Solyc08g006700.3
24
LLPS-Sol-0984
Solyc01g088730.3
25
LLPS-Sol-0985
Solyc03g119430.3
26
LLPS-Sol-1079
Solyc02g081410.3
27
LLPS-Sol-1196
Solyc09g030390.3
28
LLPS-Sol-1200
Solyc03g083430.3
29
LLPS-Sol-1224
Solyc06g066060.3
30
LLPS-Sol-1264
Solyc03g117940.3
31
LLPS-Sol-1273
Solyc01g094480.3
32
LLPS-Sol-1325
Solyc11g071660.1
33
LLPS-Sol-1354
Solyc09g098390.3
34
LLPS-Sol-1441
Solyc02g085420.3
35
LLPS-Sol-1488
Solyc11g073280.2
36
LLPS-Sol-1583
Solyc06g082100.3
37
LLPS-Sol-1596
Solyc08g081280.3
38
LLPS-Sol-1599
Solyc01g106020.3
39
LLPS-Sol-1613
Solyc10g081100.2
40
LLPS-Sol-1625
Solyc01g066610.3
41
LLPS-Sol-1634
Solyc01g009060.3
42
LLPS-Sol-1690
Solyc04g009950.3
43
LLPS-Sol-1694
Solyc11g068870.2
44
LLPS-Sol-1816
Solyc09g065720.3
45
LLPS-Sol-1863
Solyc03g119010.3
46
LLPS-Sol-2090
Solyc02g023980.3
47
LLPS-Sol-2254
Solyc10g081130.2
48
LLPS-Sol-2265
Solyc02g069790.3
49
LLPS-Sol-2307
Solyc01g111870.2
50
LLPS-Sol-2381
Solyc08g080400.1
51
LLPS-Sol-2385
Solyc05g054240.3
52
LLPS-Sol-2343
Solyc03g044380.3
A7X9Y2
EZ2
53
LLPS-Sol-0081
Solyc03g096920.3
D1MAF2
Xpo1