Selaginella moellendorffii      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 54 genes.  Reviewed (0 or Unreviewed (54

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Sem-1176
SELMODRAFT_169846
2
LLPS-Sem-0012
SELMODRAFT_100958
D8RT90
CDKD-1
3
LLPS-Sem-0154
SELMODRAFT_171333
D8RGE3
COP1-1
4
LLPS-Sem-1170
SELMODRAFT_159063
D8SX29
GSK1-1
5
LLPS-Sem-0259
SELMODRAFT_437541
D8QMX0
PUB59-1
6
LLPS-Sem-0364
SELMODRAFT_100233
D8RRX3
SELMODRAFT_100233
7
LLPS-Sem-0986
SELMODRAFT_102224
D8RUC6
SELMODRAFT_102224
8
LLPS-Sem-1608
SELMODRAFT_106721
D8S1X0
SELMODRAFT_106721
9
LLPS-Sem-0844
SELMODRAFT_110199
D8S7B4
SELMODRAFT_110199
10
LLPS-Sem-1031
SELMODRAFT_114956
D8SEI1
SELMODRAFT_114956
11
LLPS-Sem-1613
SELMODRAFT_115108
D8SEF0
SELMODRAFT_115108
12
LLPS-Sem-0125
SELMODRAFT_115473
D8SF73
SELMODRAFT_115473
13
LLPS-Sem-1800
SELMODRAFT_117870
D8SJ38
SELMODRAFT_117870
14
LLPS-Sem-2353
SELMODRAFT_75683
D8QPB9
SELMODRAFT_119432
15
LLPS-Sem-1828
SELMODRAFT_119537
D8SKN7
SELMODRAFT_119537
16
LLPS-Sem-1484
SELMODRAFT_98131
D8RPB2
SELMODRAFT_120430
17
LLPS-Sem-1633
SELMODRAFT_129290
D8T0R6
SELMODRAFT_129290
18
LLPS-Sem-0301
SELMODRAFT_129703
D8SC78
SELMODRAFT_129703
19
LLPS-Sem-2204
SELMODRAFT_13030
D8S917
SELMODRAFT_13030
20
LLPS-Sem-0868
SELMODRAFT_131763
D8T4H2
SELMODRAFT_131763
21
LLPS-Sem-0464
SELMODRAFT_134332
D8T8C2
SELMODRAFT_134332
22
LLPS-Sem-0678
SELMODRAFT_136263
D8TBL3
SELMODRAFT_136263
23
LLPS-Sem-0304
SELMODRAFT_137537
D8TDU4
SELMODRAFT_137537
24
LLPS-Sem-1149
SELMODRAFT_144158
D8R544
SELMODRAFT_144158
25
LLPS-Sem-0329
SELMODRAFT_146605
D8RF49
SELMODRAFT_146605
26
LLPS-Sem-0136
SELMODRAFT_146823
D8RFZ4
SELMODRAFT_146823
27
LLPS-Sem-2165
SELMODRAFT_149478
D8RSE2
SELMODRAFT_149478
28
LLPS-Sem-1871
SELMODRAFT_160385
D8T2C4
SELMODRAFT_160385
29
LLPS-Sem-0250
SELMODRAFT_163366
D8TF04
SELMODRAFT_163366
30
LLPS-Sem-0041
SELMODRAFT_171839
D8QRX0
SELMODRAFT_171839
31
LLPS-Sem-0567
SELMODRAFT_173603
D8RRR0
SELMODRAFT_173603
32
LLPS-Sem-0332
SELMODRAFT_179572
D8SGR2
SELMODRAFT_179572
33
LLPS-Sem-1045
SELMODRAFT_230014
D8QRA6
SELMODRAFT_230014
34
LLPS-Sem-1282
SELMODRAFT_233936
D8SFW6
SELMODRAFT_233936
35
LLPS-Sem-0020
SELMODRAFT_236385
D8T867
SELMODRAFT_236385
36
LLPS-Sem-1758
SELMODRAFT_270930
D8RLK8
SELMODRAFT_270930
37
LLPS-Sem-0122
SELMODRAFT_36388
D8S859
SELMODRAFT_36388
38
LLPS-Sem-0601
SELMODRAFT_38959
D8QMV3
SELMODRAFT_38959
39
LLPS-Sem-0708
SELMODRAFT_407718
D8R6J1
SELMODRAFT_407718
40
LLPS-Sem-0347
SELMODRAFT_420412
D8SBX3
SELMODRAFT_420412
41
LLPS-Sem-0497
SELMODRAFT_420821
D8SD82
SELMODRAFT_420821
42
LLPS-Sem-0212
SELMODRAFT_424875
D8SRA5
SELMODRAFT_424875
43
LLPS-Sem-0552
SELMODRAFT_431145
D8TBN6
SELMODRAFT_431145
44
LLPS-Sem-2024
SELMODRAFT_441325
D8RIL4
SELMODRAFT_441325
45
LLPS-Sem-1100
SELMODRAFT_445375
D8SI36
SELMODRAFT_445375
46
LLPS-Sem-1477
SELMODRAFT_446978
D8SVT1
SELMODRAFT_446978
47
LLPS-Sem-0481
SELMODRAFT_6302
D8S7H9
SELMODRAFT_6302
48
LLPS-Sem-1649
SELMODRAFT_6997
D8SNL1
SELMODRAFT_7006
49
LLPS-Sem-1896
SELMODRAFT_73732
D8QN19
SELMODRAFT_73732
50
LLPS-Sem-1990
SELMODRAFT_74095
D8QNY1
SELMODRAFT_74095
51
LLPS-Sem-1113
SELMODRAFT_8400
D8RPG8
SELMODRAFT_8400
52
LLPS-Sem-1354
SELMODRAFT_85327
D8R633
SELMODRAFT_85327
53
LLPS-Sem-0419
SELMODRAFT_87004
D8R7W2
SELMODRAFT_87004
54
LLPS-Sem-0361
SELMODRAFT_97336
D8RMG5
SELMODRAFT_97336