Sarcophilus harrisii      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 106 genes.  Reviewed (0 or Unreviewed (106

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Sah-0368
ENSSHAG00000005932.1
G3VUH3
2
LLPS-Sah-0409
ENSSHAG00000000167.1
G3VAJ5
3
LLPS-Sah-0951
ENSSHAG00000012866.1
G3WI21
4
LLPS-Sah-1278
ENSSHAG00000016107.1
G3WU71
5
LLPS-Sah-1370
ENSSHAG00000007707.1
G3W0E6
6
LLPS-Sah-1424
ENSSHAG00000017056.1
G3WXF0
7
LLPS-Sah-1631
ENSSHAG00000015356.1
G3WRN2
8
LLPS-Sah-1906
ENSSHAG00000017642.1
G3WZE7
9
LLPS-Sah-1911
ENSSHAG00000003513.1
G3VLD3
10
LLPS-Sah-2320
ENSSHAG00000006218.1
G3VVF3
11
LLPS-Sah-2413
ENSSHAG00000018313.1
G3X1R8
12
LLPS-Sah-2710
ENSSHAG00000010060.1
G3W8G1
13
LLPS-Sah-3226
ENSSHAG00000014841.1
G3WPW2
14
LLPS-Sah-3420
ENSSHAG00000011677.1
G3WE08
15
LLPS-Sah-3673
ENSSHAG00000001778.1
G3VFP4
16
LLPS-Sah-3940
ENSSHAG00000001216.1
G3VDW1
17
LLPS-Sah-0371
ENSSHAG00000009593.1
G3W6U2
AGO2
18
LLPS-Sah-0424
ENSSHAG00000011312.1
G3WCS4
AKAP17A
19
LLPS-Sah-3350
ENSSHAG00000016767.1
G3WWE4
ANXA10
20
LLPS-Sah-0813
ENSSHAG00000015232.1
G3WR88
ANXA2
21
LLPS-Sah-0018
ENSSHAG00000013731.1
G3WL28
ARL6IP4
22
LLPS-Sah-3015
ENSSHAG00000015877.1
G3WTE5
ATR
23
LLPS-Sah-2733
ENSSHAG00000008467.1
G3W2X7
BCAS2
24
LLPS-Sah-3513
ENSSHAG00000012313.1
G3WG65
C9orf78
25
LLPS-Sah-1460
ENSSHAG00000005586.1
G3VTB1
CARM1
26
LLPS-Sah-2050
ENSSHAG00000013338.1
G3WJP9
CASC3
27
LLPS-Sah-0147
ENSSHAG00000018819.1
G3X3I6
CCNL1
28
LLPS-Sah-0732
ENSSHAG00000017093.1
G3WXJ4
CDK1
29
LLPS-Sah-1133
ENSSHAG00000008376.1
G3W2M2
CDK7
30
LLPS-Sah-0342
ENSSHAG00000006474.1
G3VW95
CDKL5
31
LLPS-Sah-2107
ENSSHAG00000008336.1
G3W2I0
CLK2
32
LLPS-Sah-0691
ENSSHAG00000017866.1
G3X064
CTNNBL1
33
LLPS-Sah-0920
ENSSHAG00000003209.1
G3VKE6
DDX39B
34
LLPS-Sah-0310
ENSSHAG00000014408.1
G3WND7
DDX46
35
LLPS-Sah-1273
ENSSHAG00000002274.1
G3VHB2
DGCR8
36
LLPS-Sah-1122
ENSSHAG00000003951.1
G3VMT9
DNAJB1
37
LLPS-Sah-0688
ENSSHAG00000017827.1
G3X017
DYRK3
38
LLPS-Sah-2121
ENSSHAG00000001762.1
G3VFM6
EGF
39
LLPS-Sah-0571
ENSSHAG00000000144.1
G3VAG8
ERH
40
LLPS-Sah-1281
ENSSHAG00000013372.1
G3WJT8
EZH1
41
LLPS-Sah-2736
ENSSHAG00000013512.1
G3WKA5
FAM76B
42
LLPS-Sah-0086
ENSSHAG00000003316.1
G3VKR1
FAM83H
43
LLPS-Sah-0926
ENSSHAG00000016019.1
G3WTW6
FANCD2
44
LLPS-Sah-2837
ENSSHAG00000015462.1
G3WS08
FANCI
45
LLPS-Sah-3824
ENSSHAG00000012245.1
G3WFX8
FBXL18
46
LLPS-Sah-1511
ENSSHAG00000017666.1
G3WZH5
FGFR1
47
LLPS-Sah-4115
ENSSHAG00000004123.1
G3VNE1
FRMD8
48
LLPS-Sah-1282
ENSSHAG00000011874.1
G3WEM9
FUS
49
LLPS-Sah-2539
ENSSHAG00000005704.1
G3VTQ1
FYTTD1
50
LLPS-Sah-2466
ENSSHAG00000012129.1
G3WFI3
HIF1A
51
LLPS-Sah-2305
ENSSHAG00000004128.1
G3VNE6
HIF3A
52
LLPS-Sah-1161
ENSSHAG00000011202.1
G3WCE7
HIPK2
53
LLPS-Sah-2125
ENSSHAG00000009954.1
G3W829
HNRNPA1
54
LLPS-Sah-1285
ENSSHAG00000017930.1
G3X0E5
HNRNPA2B1
55
LLPS-Sah-0775
ENSSHAG00000017109.1
G3WXL3
HNRNPK
56
LLPS-Sah-1120
ENSSHAG00000016697.1
G3WW63
HSPH1
57
LLPS-Sah-2018
ENSSHAG00000010138.1
G3W8Q3
ILF2
58
LLPS-Sah-0867
ENSSHAG00000001712.1
G3VFH0
ILF3
59
LLPS-Sah-1837
ENSSHAG00000010210.1
G3W8Z3
IVNS1ABP
60
LLPS-Sah-0458
ENSSHAG00000011391.1
G3WD19
KPNA2
61
LLPS-Sah-1176
ENSSHAG00000004597.1
G3VPZ9
LOC100930529
62
LLPS-Sah-1160
ENSSHAG00000012033.1
G3WF72
LUC7L
63
LLPS-Sah-0203
ENSSHAG00000010195.1
G3W8X5
NONO
64
LLPS-Sah-0787
ENSSHAG00000004689.1
G3VQB1
NOSIP
65
LLPS-Sah-2273
ENSSHAG00000016609.1
G3WVV2
NR5A1
66
LLPS-Sah-0917
ENSSHAG00000014222.1
G3WMR2
NUAK2
67
LLPS-Sah-4061
ENSSHAG00000017663.1
G3WZH0
P2RY12
68
LLPS-Sah-2127
ENSSHAG00000014338.1
G3WN53
PLRG1
69
LLPS-Sah-1938
ENSSHAG00000017867.1
G3X065
PPIG
70
LLPS-Sah-0080
ENSSHAG00000009462.1
G3W6C2
PRPF19
71
LLPS-Sah-0842
ENSSHAG00000006167.1
G3VV91
PRPF8
72
LLPS-Sah-2592
ENSSHAG00000017955.1
G3X0H5
PSMA3
73
LLPS-Sah-1017
ENSSHAG00000004696.1
G3VQC0
PSPC1
74
LLPS-Sah-0895
ENSSHAG00000005875.1
G3VUA4
PTBP1
75
LLPS-Sah-2817
ENSSHAG00000017744.1
G3WZS0
RAPGEF1
76
LLPS-Sah-2322
ENSSHAG00000012480.1
G3WGR3
RBM17
77
LLPS-Sah-2737
ENSSHAG00000012932.1
G3WIA4
RBM23
78
LLPS-Sah-2670
ENSSHAG00000015257.1
G3WRB6
RNF151
79
LLPS-Sah-2843
ENSSHAG00000016951.1
G3WX24
RNPS1
80
LLPS-Sah-0058
ENSSHAG00000008865.1
G3W4A9
SARNP
81
LLPS-Sah-4012
ENSSHAG00000006841.1
G3VXH9
SF1
82
LLPS-Sah-1340
ENSSHAG00000014530.1
G3WNU1
SF3A3
83
LLPS-Sah-1270
ENSSHAG00000017564.1
G3WZ56
SF3B1
84
LLPS-Sah-1581
ENSSHAG00000000758.1
G3VCE4
SNRNP200
85
LLPS-Sah-1166
ENSSHAG00000002194.1
G3VH25
SNRNP70
86
LLPS-Sah-3688
ENSSHAG00000003706.1
G3VM00
SNRPA
87
LLPS-Sah-1267
ENSSHAG00000006364.1
G3VVW4
SNRPA1
88
LLPS-Sah-1447
ENSSHAG00000014957.1
G3WQB0
SNRPB2
89
LLPS-Sah-3221
ENSSHAG00000008266.1
G3W2A0
SON
90
LLPS-Sah-3423
ENSSHAG00000007889.1
G3W104
SPOP
91
LLPS-Sah-1314
ENSSHAG00000017712.1
G3WZN0
SRRM2
92
LLPS-Sah-1396
ENSSHAG00000012111.1
G3WFG3
SRSF11
93
LLPS-Sah-0667
ENSSHAG00000010876.1
G3WBA5
SRSF3
94
LLPS-Sah-1617
ENSSHAG00000005685.1
G3VTM7
SRSF9
95
LLPS-Sah-0614
ENSSHAG00000014833.1
G3WPV2
STAT3
96
LLPS-Sah-1821
ENSSHAG00000011968.1
G3WEY8
SUMO1
97
LLPS-Sah-0338
ENSSHAG00000016699.1
G3WW65
TGFBR1
98
LLPS-Sah-1435
ENSSHAG00000002437.1
G3VHV1
TRA2B
99
LLPS-Sah-2555
ENSSHAG00000018408.1
G3X233
TTC14
100
LLPS-Sah-0361
ENSSHAG00000001167.1
G3VDQ2
U2AF2
101
LLPS-Sah-1874
ENSSHAG00000014407.1
G3WND6
U2SURP
102
LLPS-Sah-0201
ENSSHAG00000011230.1
G3WCI2
XPO1
103
LLPS-Sah-1975
ENSSHAG00000002538.1
G3VI62
YTHDC1
104
LLPS-Sah-0241
ENSSHAG00000001353.1
G3VEB3
ZC3H11A
105
LLPS-Sah-3993
ENSSHAG00000000859.1
G3VCQ6
ZNF106
106
LLPS-Sah-1647
ENSSHAG00000011534.1
G3WDI9
ZNF131