Puccinia graminis      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 37 genes.  Reviewed (0 or Unreviewed (37

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Pug-0841
PGTG_00129
E3JR11
PGTG_00129
2
LLPS-Pug-1349
PGTG_00246
E3JQF9
PGTG_00246
3
LLPS-Pug-1112
PGTG_00318
E3JQ72
PGTG_00318
4
LLPS-Pug-0320
PGTG_00662
E3JQS4
PGTG_00662
5
LLPS-Pug-1283
PGTG_00861
E3JTX6
PGTG_00861
6
LLPS-Pug-1479
PGTG_00925
E3JU69
PGTG_00925
7
LLPS-Pug-1084
PGTG_01286
E3JV80
PGTG_01286
8
LLPS-Pug-0969
PGTG_01300
E3JV94
PGTG_01300
9
LLPS-Pug-0889
PGTG_01413
E3JRZ5
PGTG_01413
10
LLPS-Pug-0904
PGTG_02298
E3JXR2
PGTG_02298
11
LLPS-Pug-0322
PGTG_02327
E3JXU1
PGTG_02327
12
LLPS-Pug-0900
PGTG_02561
E3JVP5
PGTG_02561
13
LLPS-Pug-1099
PGTG_02594
E3JVS8
PGTG_02594
14
LLPS-Pug-0408
PGTG_04357
E3K232
PGTG_04357
15
LLPS-Pug-0418
PGTG_06004
E3K587
PGTG_06004
16
LLPS-Pug-0723
PGTG_06023
E3K5A6
PGTG_06023
17
LLPS-Pug-0094
PGTG_06363
E3K7Z4
PGTG_06363
18
LLPS-Pug-1068
PGTG_06936
E3KAH7
PGTG_06936
19
LLPS-Pug-0188
PGTG_07623
E3KCS4
PGTG_07623
20
LLPS-Pug-0714
PGTG_10008
E3KF08
PGTG_10008
21
LLPS-Pug-0488
PGTG_10087
E3KJ92
PGTG_10087
22
LLPS-Pug-0275
PGTG_10429
E3KKY3
PGTG_10429
23
LLPS-Pug-0426
PGTG_10718
E3KJT4
PGTG_10718
24
LLPS-Pug-1433
PGTG_11243
E3KL99
PGTG_11243
25
LLPS-Pug-1222
PGTG_12078
E3KP97
PGTG_12078
26
LLPS-Pug-0996
PGTG_12270
E3KPS9
PGTG_12270
27
LLPS-Pug-0381
PGTG_13675
E3KT61
PGTG_13675
28
LLPS-Pug-0958
PGTG_14273
E3KV94
PGTG_14273
29
LLPS-Pug-0733
PGTG_15320
E3KYT2
PGTG_15320
30
LLPS-Pug-0805
PGTG_15755
E3L016
PGTG_15755
31
LLPS-Pug-0436
PGTG_17653
E3L4X4
PGTG_17653
32
LLPS-Pug-1301
PGTG_19166
E3L9C5
PGTG_19166
33
LLPS-Pug-0748
PGTG_19241
E3LA79
PGTG_19241
34
LLPS-Pug-0303
PGTG_21838
H6QSJ5
PGTG_21838
35
LLPS-Pug-0574
PGTG_22302
H6QU19
PGTG_22302
36
LLPS-Pug-1424
PGTG_22588
H6QV00
PGTG_22588
37
LLPS-Pug-0502
PGTG_22653
H6QV64
PGTG_22653