Prunus persica      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 59 genes.  Reviewed (0 or Unreviewed (59

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Prp-1395
PRUPE_1G047500
A0A251QSL6
PRUPE_1G047500
2
LLPS-Prp-2447
PRUPE_1G132900
M5XPQ2
PRUPE_1G132900
3
LLPS-Prp-0927
PRUPE_1G134100
A0A251QWP5
PRUPE_1G134100
4
LLPS-Prp-1557
PRUPE_1G136600
M5XYE5
PRUPE_1G136600
5
LLPS-Prp-1491
PRUPE_1G144400
M5XS42
PRUPE_1G144400
6
LLPS-Prp-2087
PRUPE_1G172700
A0A251QYQ3
PRUPE_1G172700
7
LLPS-Prp-0333
PRUPE_1G210100
A0A251R0X2
PRUPE_1G210100
8
LLPS-Prp-0084
PRUPE_1G395400
A0A251RAB5
PRUPE_1G395400
9
LLPS-Prp-1818
PRUPE_1G395500
A0A251RA73
PRUPE_1G395500
10
LLPS-Prp-1307
PRUPE_1G454400
M5XDE0
PRUPE_1G454400
11
LLPS-Prp-0207
PRUPE_1G463200
A0A251RDQ2
PRUPE_1G463200
12
LLPS-Prp-0030
PRUPE_1G479900
M5XQ24
PRUPE_1G479900
13
LLPS-Prp-0089
PRUPE_1G492700
M5XQI4
PRUPE_1G492700
14
LLPS-Prp-1538
PRUPE_1G564400
M5XEB1
PRUPE_1G564400
15
LLPS-Prp-2466
PRUPE_2G206800
M5XLS7
PRUPE_2G206800
16
LLPS-Prp-2274
PRUPE_2G236400
A0A251QKJ9
PRUPE_2G236400
17
LLPS-Prp-0421
PRUPE_2G275100
M5X3P3
PRUPE_2G275100
18
LLPS-Prp-1537
PRUPE_2G311500
M5X8R3
PRUPE_2G311500
19
LLPS-Prp-0964
PRUPE_2G324800
M5X9G0
PRUPE_2G324800
20
LLPS-Prp-2050
PRUPE_3G000500
M5XB50
PRUPE_3G000500
21
LLPS-Prp-1287
PRUPE_3G006000
M5XME6
PRUPE_3G006000
22
LLPS-Prp-1532
PRUPE_3G013000
M5X6B1
PRUPE_3G013000
23
LLPS-Prp-2315
PRUPE_3G079300
A0A251PX40
PRUPE_3G079300
24
LLPS-Prp-1345
PRUPE_3G088200
A0A251PXH3
PRUPE_3G088200
25
LLPS-Prp-0571
PRUPE_3G160800
M5WTH1
PRUPE_3G160800
26
LLPS-Prp-1822
PRUPE_3G183100
M5WU94
PRUPE_3G183100
27
LLPS-Prp-1651
PRUPE_3G191100
A0A251Q2E1
PRUPE_3G191100
28
LLPS-Prp-0401
PRUPE_4G033800
M5WGG6
PRUPE_4G033800
29
LLPS-Prp-0232
PRUPE_4G044200
A0A251PFM2
PRUPE_4G044200
30
LLPS-Prp-1312
PRUPE_4G089800
M5WFQ2
PRUPE_4G089800
31
LLPS-Prp-0417
PRUPE_5G003900
M5WZQ0
PRUPE_5G003900
32
LLPS-Prp-0849
PRUPE_5G031300
A0A251P6F2
PRUPE_5G031300
33
LLPS-Prp-1039
PRUPE_5G086300
A0A251P5M0
PRUPE_5G086300
34
LLPS-Prp-1270
PRUPE_5G091700
M5WU02
PRUPE_5G091700
35
LLPS-Prp-2455
PRUPE_5G227900
M5W9H6
PRUPE_5G227900
36
LLPS-Prp-1522
PRUPE_5G229800
M5WV86
PRUPE_5G229800
37
LLPS-Prp-1603
PRUPE_6G046700
M5WJP5
PRUPE_6G046700
38
LLPS-Prp-2270
PRUPE_6G058600
A0A251NKT3
PRUPE_6G058600
39
LLPS-Prp-0126
PRUPE_6G070300
A0A251NLE8
PRUPE_6G070300
40
LLPS-Prp-2565
PRUPE_6G161000
M5WL68
PRUPE_6G161000
41
LLPS-Prp-1980
PRUPE_6G178500
M5WBT1
PRUPE_6G178500
42
LLPS-Prp-1962
PRUPE_6G191400
M5W001
PRUPE_6G191400
43
LLPS-Prp-2377
PRUPE_6G246100
A0A251NVA8
PRUPE_6G246100
44
LLPS-Prp-1931
PRUPE_6G320000
M5VZF1
PRUPE_6G320000
45
LLPS-Prp-0490
PRUPE_6G349400
M5WK14
PRUPE_6G349400
46
LLPS-Prp-1005
PRUPE_6G358100
M5W7D1
PRUPE_6G358100
47
LLPS-Prp-1465
PRUPE_7G022800
A0A251N5G6
PRUPE_7G022800
48
LLPS-Prp-0646
PRUPE_7G083500
A0A251N8J6
PRUPE_7G083500
49
LLPS-Prp-1093
PRUPE_7G125300
A0A251NAN7
PRUPE_7G125300
50
LLPS-Prp-1231
PRUPE_7G130900
A0A251NCX4
PRUPE_7G130900
51
LLPS-Prp-1862
PRUPE_7G153200
A0A251NBU5
PRUPE_7G153200
52
LLPS-Prp-0087
PRUPE_7G175500
M5VQZ0
PRUPE_7G175500
53
LLPS-Prp-0655
PRUPE_8G065000
M5W849
PRUPE_8G065000
54
LLPS-Prp-0145
PRUPE_8G070900
A0A251MUE9
PRUPE_8G070900
55
LLPS-Prp-0322
PRUPE_8G168900
M5VP68
PRUPE_8G168900
56
LLPS-Prp-2371
PRUPE_8G170300
A0A251N1A1
PRUPE_8G170300
57
LLPS-Prp-1370
PRUPE_8G233900
A0A251N2D0
PRUPE_8G233900
58
LLPS-Prp-1673
PRUPE_8G260600
A0A251N3J2
PRUPE_8G260600
59
LLPS-Prp-0117
PRUPE_8G262900
A0A251N5U2
PRUPE_8G262900