Pongo abelii      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 111 genes.  Reviewed (0 or Unreviewed (111

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Poa-0558
ENSPPYG00000013083.2
A0A0A0MXR0
2
LLPS-Poa-0676
ENSPPYG00000020418.1
H2PVV2
3
LLPS-Poa-0993
ENSPPYG00000010429.2
H2P090
4
LLPS-Poa-3067
ENSPPYG00000005881.2
H2NLG0
5
LLPS-Poa-3539
ENSPPYG00000013681.2
H2PA53
6
LLPS-Poa-3656
ENSPPYG00000019685.2
H2PTN2
7
LLPS-Poa-3939
ENSPPYG00000004746.1
H2NHZ3
8
LLPS-Poa-4050
ENSPPYG00000019631.2
H2PTG8
9
LLPS-Poa-4063
ENSPPYG00000018947.1
H2PRE3
10
LLPS-Poa-4022
ENSPPYG00000020084.1
H2PUS4
AKAP17A
11
LLPS-Poa-3299
ENSPPYG00000008749.2
H2NV29
ALYREF
12
LLPS-Poa-1552
ENSPPYG00000015183.1
H2PEP8
ANXA10
13
LLPS-Poa-0717
ENSPPYG00000006526.2
Q5R5A0
ANXA2
14
LLPS-Poa-4251
ENSPPYG00000005079.2
H2NJ09
ARL6IP4
15
LLPS-Poa-1846
ENSPPYG00000014173.2
H2PBM9
ATR
16
LLPS-Poa-3361
ENSPPYG00000001000.2
H2N6A7
BCAS2
17
LLPS-Poa-1300
ENSPPYG00000009565.1
H2NXK6
CARM1
18
LLPS-Poa-2192
ENSPPYG00000008467.1
H2NU84
CASC3
19
LLPS-Poa-1919
ENSPPYG00000014237.2
H2PBU1
CCNL1
20
LLPS-Poa-0607
ENSPPYG00000016661.2
H2PJ78
CDC5L
21
LLPS-Poa-1624
ENSPPYG00000002421.1
H2NAT8
CDK1
22
LLPS-Poa-0645
ENSPPYG00000015525.2
H2PFR4
CDK7
23
LLPS-Poa-2254
ENSPPYG00000020166.2
H2PV20
CDKL5
24
LLPS-Poa-3302
ENSPPYG00000000748.1
H2N5H3
CLK2
25
LLPS-Poa-1140
ENSPPYG00000000480.2
H2N4L5
COP1
26
LLPS-Poa-0655
ENSPPYG00000016548.2
H2PIV6
CR201_G0016348
27
LLPS-Poa-0804
ENSPPYG00000003098.2
H2NCZ0
CR201_G0031345
28
LLPS-Poa-1718
ENSPPYG00000015936.2
H2PH17
CSNK1A1
29
LLPS-Poa-0455
ENSPPYG00000010989.2
H2P1V7
CTNNBL1
30
LLPS-Poa-0394
ENSPPYG00000016433.2
Q5RE47
DDX39B
31
LLPS-Poa-1409
ENSPPYG00000015792.2
H2PGK8
DDX46
32
LLPS-Poa-2604
ENSPPYG00000011591.2
H2P3N4
DGCR8
33
LLPS-Poa-0559
ENSPPYG00000009647.2
H2NXT6
DNAJB1
34
LLPS-Poa-1314
ENSPPYG00000006360.2
H2NMV2
DNAJC17
35
LLPS-Poa-3962
ENSPPYG00000014999.2
H2PE43
EGF
36
LLPS-Poa-1677
ENSPPYG00000005939.1
H2NLM5
ERH
37
LLPS-Poa-0846
ENSPPYG00000029443.1
K7ET83
EZH1
38
LLPS-Poa-2471
ENSPPYG00000003789.2
H2NF06
FAM76B
39
LLPS-Poa-1854
ENSPPYG00000013666.2
H2PA36
FANCD2
40
LLPS-Poa-0650
ENSPPYG00000006762.2
H2NP52
FANCI
41
LLPS-Poa-4035
ENSPPYG00000017335.2
H2PLE5
FBXL18
42
LLPS-Poa-3091
ENSPPYG00000014456.2
H2PCH5
FYTTD1
43
LLPS-Poa-0290
ENSPPYG00000017613.2
H2PMA5
GLI3
44
LLPS-Poa-0511
ENSPPYG00000013507.2
H2P9M0
GSK3B
45
LLPS-Poa-4292
ENSPPYG00000010147.2
H2NZB2
HIF3A
46
LLPS-Poa-1004
ENSPPYG00000018051.1
H2PNN9
HIPK2
47
LLPS-Poa-1223
ENSPPYG00000017715.2
A0A2J8VDV7
HNRNPA2B1
48
LLPS-Poa-2757
ENSPPYG00000019327.2
Q5R5H8
HNRNPK
49
LLPS-Poa-2599
ENSPPYG00000000595.1
H2N503
HSPA6
50
LLPS-Poa-2246
ENSPPYG00000005258.2
H2NJJ5
HSPH1
51
LLPS-Poa-0053
ENSPPYG00000000800.2
Q5RFJ1
ILF2
52
LLPS-Poa-3485
ENSPPYG00000029648.1
K7EU70
ILF3
53
LLPS-Poa-1408
ENSPPYG00000000414.2
H2N4D9
IVNS1ABP
54
LLPS-Poa-1254
ENSPPYG00000008569.2
H2NUI7
KPNA2
55
LLPS-Poa-0016
ENSPPYG00000006901.2
H2NPJ0
LUC7L
56
LLPS-Poa-0226
ENSPPYG00000018048.1
H2PNN7
LUC7L2
57
LLPS-Poa-3295
ENSPPYG00000001335.2
H2N7C7
MAGOH
58
LLPS-Poa-1917
ENSPPYG00000012312.2
A0A2J8XBS3
NAGK
59
LLPS-Poa-4429
ENSPPYG00000020679.2
H2PWM4
NKAP
60
LLPS-Poa-3070
ENSPPYG00000020451.2
H2PVZ3
NONO
61
LLPS-Poa-0266
ENSPPYG00000010255.2
H2NZN7
NOSIP
62
LLPS-Poa-4070
ENSPPYG00000019599.1
H2PTD0
NR5A1
63
LLPS-Poa-2351
ENSPPYG00000008130.2
H2NT72
NSRP1
64
LLPS-Poa-1698
ENSPPYG00000000307.2
Q5R7G9
NUAK2
65
LLPS-Poa-3821
ENSPPYG00000014215.1
H2PBS1
P2RY12
66
LLPS-Poa-0165
ENSPPYG00000005663.1
H2NKS6
PABPN1
67
LLPS-Poa-0217
ENSPPYG00000015138.2
H2PEK1
PLRG1
68
LLPS-Poa-3384
ENSPPYG00000005766.2
Q5R5X0
PNN
69
LLPS-Poa-3092
ENSPPYG00000012914.2
H2P7R8
PPIG
70
LLPS-Poa-2271
ENSPPYG00000003202.2
H2ND95
PRPF19
71
LLPS-Poa-1422
ENSPPYG00000007777.2
A0A2J8SNX1
PRPF8
72
LLPS-Poa-2480
ENSPPYG00000005855.2
H2NLC9
PSMA3
73
LLPS-Poa-3890
ENSPPYG00000005186.2
H2NJB9
PSPC1
74
LLPS-Poa-1575
ENSPPYG00000009289.2
H2NWR1
PTBP1
75
LLPS-Poa-3808
ENSPPYG00000002067.2
A0A2J8VK51
RBM17
76
LLPS-Poa-2980
ENSPPYG00000005649.2
H2NKQ7
RBM23
77
LLPS-Poa-0925
ENSPPYG00000020717.2
H2PWS1
RBMX2
78
LLPS-Poa-2366
ENSPPYG00000006976.2
H2NPS0
RNF151
79
LLPS-Poa-0166
ENSPPYG00000004630.1
Q5R4V4
SARNP
80
LLPS-Poa-0437
ENSPPYG00000011707.2
H2P414
SF3A1
81
LLPS-Poa-1512
ENSPPYG00000009342.2
H2NWW6
SF3A2
82
LLPS-Poa-2326
ENSPPYG00000001519.2
H2N7X2
SF3A3
83
LLPS-Poa-2981
ENSPPYG00000013044.2
H2P874
SF3B1
84
LLPS-Poa-1818
ENSPPYG00000001560.2
H2N816
SFPQ
85
LLPS-Poa-1332
ENSPPYG00000006583.2
H2NNK3
SMAD3
86
LLPS-Poa-0034
ENSPPYG00000012068.2
H2P548
SNRNP200
87
LLPS-Poa-0219
ENSPPYG00000005088.2
H2NJ18
SNRNP35
88
LLPS-Poa-0067
ENSPPYG00000010234.2
H2NZL5
SNRNP70
89
LLPS-Poa-1260
ENSPPYG00000010002.2
H2NYW3
SNRPA
90
LLPS-Poa-0158
ENSPPYG00000006827.1
A0A2J8VXU6
SNRPA1
91
LLPS-Poa-1463
ENSPPYG00000010723.1
A0A2J8VD83
SNRPB2
92
LLPS-Poa-1898
ENSPPYG00000011380.2
H2P312
SON
93
LLPS-Poa-4084
ENSPPYG00000008923.2
Q5NVK7
SPOP
94
LLPS-Poa-2451
ENSPPYG00000007012.2
H2NPV6
SRRM2
95
LLPS-Poa-3274
ENSPPYG00000008240.2
K7EVN8
SRSF1
96
LLPS-Poa-0185
ENSPPYG00000001726.2
H2N8K8
SRSF10
97
LLPS-Poa-1812
ENSPPYG00000001245.2
H2N728
SRSF11
98
LLPS-Poa-3331
ENSPPYG00000008668.1
A0A2J8Y1F5
SRSF2
99
LLPS-Poa-0126
ENSPPYG00000001629.2
H2N892
SRSF4
100
LLPS-Poa-1654
ENSPPYG00000012480.2
H2P6G3
SRSF7
101
LLPS-Poa-1092
ENSPPYG00000005031.1
H2NIV7
SRSF9
102
LLPS-Poa-0801
ENSPPYG00000008392.2
H2NU07
STAT3
103
LLPS-Poa-4508
ENSPPYG00000017224.2
H2PL26
TAP1
104
LLPS-Poa-1590
ENSPPYG00000019439.2
H2PSV9
TGFBR1
105
LLPS-Poa-1793
ENSPPYG00000014374.2
H2PC92
TRA2B
106
LLPS-Poa-2234
ENSPPYG00000014324.2
H2PC38
TTC14
107
LLPS-Poa-2644
ENSPPYG00000014178.1
H2PBN5
U2SURP
108
LLPS-Poa-0056
ENSPPYG00000012383.2
H2P637
XPO1
109
LLPS-Poa-0537
ENSPPYG00000014726.2
H2PDA1
YTHDC1
110
LLPS-Poa-2602
ENSPPYG00000000327.2
A0A2J8R6P1
ZC3H11A
111
LLPS-Poa-1931
ENSPPYG00000015437.2
H2PFH1
ZNF131