Poecilia formosa      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 106 genes.  Reviewed (0 or Unreviewed (106

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Pof-0067
ENSPFOG00000010578.2
A0A087XYF8
2
LLPS-Pof-0092
ENSPFOG00000007933.2
A0A087XQT7
3
LLPS-Pof-0142
ENSPFOG00000010799.2
A0A087XYH3
4
LLPS-Pof-0161
ENSPFOG00000008820.2
A0A087XSR0
5
LLPS-Pof-0181
ENSPFOG00000016768.2
A0A087YFQ4
6
LLPS-Pof-0200
ENSPFOG00000006433.2
A0A087XKW0
7
LLPS-Pof-0231
ENSPFOG00000004947.2
A0A087XGN2
8
LLPS-Pof-0235
ENSPFOG00000012502.1
A0A087Y3M1
9
LLPS-Pof-0245
ENSPFOG00000019570.2
A0A087YNT9
10
LLPS-Pof-0306
ENSPFOG00000013517.1
A0A087Y6D6
11
LLPS-Pof-0314
ENSPFOG00000003127.2
A0A087XBC2
12
LLPS-Pof-0316
ENSPFOG00000003362.2
A0A087XC33
13
LLPS-Pof-0320
ENSPFOG00000019567.2
A0A087YNT6
14
LLPS-Pof-0342
ENSPFOG00000010881.2
A0A087XYL3
15
LLPS-Pof-0362
ENSPFOG00000015110.1
A0A087YB77
16
LLPS-Pof-0474
ENSPFOG00000017752.2
A0A096LQU3
17
LLPS-Pof-0512
ENSPFOG00000016208.1
A0A087YE07
18
LLPS-Pof-0548
ENSPFOG00000013768.2
A0A087Y785
19
LLPS-Pof-0549
ENSPFOG00000001825.2
A0A087X7J3
20
LLPS-Pof-0551
ENSPFOG00000007005.2
A0A087XNV7
21
LLPS-Pof-0603
ENSPFOG00000007468.1
A0A087XP06
22
LLPS-Pof-0641
ENSPFOG00000004251.2
A0A087XEN6
23
LLPS-Pof-0691
ENSPFOG00000005383.2
A0A087XHS8
24
LLPS-Pof-0751
ENSPFOG00000012210.1
A0A087Y2H0
25
LLPS-Pof-0761
ENSPFOG00000013382.1
A0A087Y6N4
26
LLPS-Pof-0872
ENSPFOG00000000552.2
A0A087X401
27
LLPS-Pof-0895
ENSPFOG00000013271.2
A0A087Y5L8
28
LLPS-Pof-0935
ENSPFOG00000000095.2
A0A096M4X5
29
LLPS-Pof-0973
ENSPFOG00000000674.1
A0A087X4F3
30
LLPS-Pof-1034
ENSPFOG00000000050.1
A0A087X2P7
31
LLPS-Pof-1048
ENSPFOG00000016671.1
A0A087YFF0
32
LLPS-Pof-1080
ENSPFOG00000013233.2
A0A087Y5L9
33
LLPS-Pof-1149
ENSPFOG00000001014.2
A0A087X5L2
34
LLPS-Pof-1159
ENSPFOG00000008390.2
A0A087XRK9
35
LLPS-Pof-1162
ENSPFOG00000004651.2
A0A087XFL7
36
LLPS-Pof-1227
ENSPFOG00000009373.1
A0A087XUK6
37
LLPS-Pof-1249
ENSPFOG00000012725.2
A0A087Y3Y8
38
LLPS-Pof-1264
ENSPFOG00000006320.2
A0A087XL47
39
LLPS-Pof-1282
ENSPFOG00000000376.1
A0A087X3J1
40
LLPS-Pof-1300
ENSPFOG00000012990.2
A0A087Y5F3
41
LLPS-Pof-1321
ENSPFOG00000010351.2
A0A087XX68
42
LLPS-Pof-1356
ENSPFOG00000006336.1
A0A087XKU6
43
LLPS-Pof-1361
ENSPFOG00000004799.2
A0A096M2E7
44
LLPS-Pof-1369
ENSPFOG00000017632.2
A0A087YIC5
45
LLPS-Pof-1398
ENSPFOG00000010796.2
A0A087XYK1
46
LLPS-Pof-1447
ENSPFOG00000004318.2
A0A087XEI8
47
LLPS-Pof-1487
ENSPFOG00000018484.2
A0A087YKP2
48
LLPS-Pof-1509
ENSPFOG00000011017.2
A0A087XZE3
49
LLPS-Pof-1554
ENSPFOG00000013507.2
A0A087Y6J5
50
LLPS-Pof-1593
ENSPFOG00000000324.2
A0A087X3H6
51
LLPS-Pof-1624
ENSPFOG00000010717.2
A0A096MHN8
52
LLPS-Pof-1736
ENSPFOG00000022525.1
A0A096M0W9
53
LLPS-Pof-1743
ENSPFOG00000015945.2
A0A087YD98
54
LLPS-Pof-1744
ENSPFOG00000022951.1
A0A096LTM1
55
LLPS-Pof-1782
ENSPFOG00000004966.2
A0A087XH26
56
LLPS-Pof-1783
ENSPFOG00000016436.2
A0A087YEP0
57
LLPS-Pof-1787
ENSPFOG00000015459.2
A0A087YBZ8
58
LLPS-Pof-1921
ENSPFOG00000008036.2
A0A087XQM8
59
LLPS-Pof-1982
ENSPFOG00000018942.2
A0A087YM03
60
LLPS-Pof-2049
ENSPFOG00000000914.2
A0A087X562
61
LLPS-Pof-2055
ENSPFOG00000002754.2
A0A087XA94
62
LLPS-Pof-2065
ENSPFOG00000000917.2
A0A087X537
63
LLPS-Pof-2102
ENSPFOG00000013683.2
A0A087Y6W1
64
LLPS-Pof-2203
ENSPFOG00000018619.1
A0A087YL33
65
LLPS-Pof-2322
ENSPFOG00000020356.2
A0A087YR29
66
LLPS-Pof-2337
ENSPFOG00000011001.2
A0A087XYZ7
67
LLPS-Pof-2388
ENSPFOG00000006880.1
A0A087XM73
68
LLPS-Pof-2470
ENSPFOG00000015978.1
A0A087YDE0
69
LLPS-Pof-2483
ENSPFOG00000017265.2
A0A087YH60
70
LLPS-Pof-2531
ENSPFOG00000012437.2
A0A087Y374
71
LLPS-Pof-2537
ENSPFOG00000005284.2
A0A087XIL9
72
LLPS-Pof-2645
ENSPFOG00000003183.2
A0A096LRK8
73
LLPS-Pof-2652
ENSPFOG00000024570.1
A0A096M502
74
LLPS-Pof-2719
ENSPFOG00000013630.2
A0A087Y6S0
75
LLPS-Pof-2765
ENSPFOG00000014489.2
A0A087Y9M8
76
LLPS-Pof-2789
ENSPFOG00000019881.1
A0A087YPQ5
77
LLPS-Pof-2832
ENSPFOG00000010501.2
A0A087XY45
78
LLPS-Pof-2865
ENSPFOG00000013404.2
A0A087Y628
79
LLPS-Pof-2890
ENSPFOG00000012077.2
A0A087Y259
80
LLPS-Pof-2920
ENSPFOG00000019042.2
A0A087YMC4
81
LLPS-Pof-2966
ENSPFOG00000010966.2
A0A087XYX4
82
LLPS-Pof-3050
ENSPFOG00000008915.2
A0A096LQE2
83
LLPS-Pof-3088
ENSPFOG00000014895.1
A0A087YAB1
84
LLPS-Pof-3173
ENSPFOG00000002558.1
A0A087X9V1
85
LLPS-Pof-3235
ENSPFOG00000000073.1
A0A087X2S7
86
LLPS-Pof-3318
ENSPFOG00000001306.2
A0A087X617
87
LLPS-Pof-3329
ENSPFOG00000008233.2
A0A087XRW4
88
LLPS-Pof-3466
ENSPFOG00000018325.2
A0A087YK76
89
LLPS-Pof-3485
ENSPFOG00000022975.1
A0A096MIM6
90
LLPS-Pof-3571
ENSPFOG00000017422.2
A0A087YHK3
91
LLPS-Pof-3586
ENSPFOG00000022307.1
A0A096LS63
92
LLPS-Pof-3684
ENSPFOG00000002622.2
A0A087X9N1
93
LLPS-Pof-3724
ENSPFOG00000009804.1
A0A087XVF8
94
LLPS-Pof-3783
ENSPFOG00000014934.2
A0A087YBA0
95
LLPS-Pof-3869
ENSPFOG00000019294.2
A0A087YN12
96
LLPS-Pof-3991
ENSPFOG00000011548.2
A0A087Y0H7
97
LLPS-Pof-3992
ENSPFOG00000009640.1
A0A087XUY3
98
LLPS-Pof-4032
ENSPFOG00000022825.1
A0A096MC11
99
LLPS-Pof-4165
ENSPFOG00000014621.2
A0A087Y9K3
100
LLPS-Pof-2171
ENSPFOG00000005321.2
A0A087XI25
AGO2
101
LLPS-Pof-0030
ENSPFOG00000018843.2
A0A087YLQ3
CDKL5 (1 of many)
102
LLPS-Pof-0703
ENSPFOG00000004699.2
A0A087XFN0
ERH
103
LLPS-Pof-0500
ENSPFOG00000013708.2
A0A087Y758
EZH1
104
LLPS-Pof-2340
ENSPFOG00000017757.2
A0A087YIN0
FGFR1
105
LLPS-Pof-3214
ENSPFOG00000009978.1
A0A087XVY3
RNPS1
106
LLPS-Pof-3901
ENSPFOG00000010868.2
A0A087XYL9
SPOP