Phaseolus vulgaris      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 57 genes.  Reviewed (0 or Unreviewed (57

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Phv-0167
PHAVU_001G040900g
V7CVX1
PHAVU_001G040900g
2
LLPS-Phv-0830
PHAVU_001G104500g
V7CUR0
PHAVU_001G104500g
3
LLPS-Phv-0800
PHAVU_001G155500g
V7CYV9
PHAVU_001G155500g
4
LLPS-Phv-0178
PHAVU_001G207100g
V7D0C8
PHAVU_001G207100g
5
LLPS-Phv-2211
PHAVU_002G017200g
V7CIP7
PHAVU_002G017200g
6
LLPS-Phv-2060
PHAVU_002G029300g
V7CI13
PHAVU_002G029300g
7
LLPS-Phv-0700
PHAVU_002G037900g
V7CJE2
PHAVU_002G037900g
8
LLPS-Phv-1383
PHAVU_002G038500g
V7CIC1
PHAVU_002G038500g
9
LLPS-Phv-2213
PHAVU_002G100900g
V7CI72
PHAVU_002G100900g
10
LLPS-Phv-0442
PHAVU_002G104100g
V7CI31
PHAVU_002G104100g
11
LLPS-Phv-1253
PHAVU_002G152600g
V7CMF2
PHAVU_002G152600g
12
LLPS-Phv-1142
PHAVU_002G208600g
V7CLP4
PHAVU_002G208600g
13
LLPS-Phv-2320
PHAVU_002G261500g
V7CS22
PHAVU_002G261500g
14
LLPS-Phv-1197
PHAVU_002G326800g
V7CQK8
PHAVU_002G326800g
15
LLPS-Phv-1527
PHAVU_002G327300g
V7CT05
PHAVU_002G327300g
16
LLPS-Phv-0861
PHAVU_003G001500g
V7C4B7
PHAVU_003G001500g
17
LLPS-Phv-0822
PHAVU_003G099500g
V7CAC4
PHAVU_003G099500g
18
LLPS-Phv-0340
PHAVU_003G105500g
V7C830
PHAVU_003G105500g
19
LLPS-Phv-1179
PHAVU_003G206200g
V7CDP1
PHAVU_003G206200g
20
LLPS-Phv-1582
PHAVU_003G212200g
V7CBL6
PHAVU_003G212200g
21
LLPS-Phv-1637
PHAVU_003G2751000g
V7CDN7
PHAVU_003G2751000g
22
LLPS-Phv-1199
PHAVU_004G073800g
V7C0X0
PHAVU_004G073800g
23
LLPS-Phv-0151
PHAVU_004G090900g
V7C4X0
PHAVU_004G090900g
24
LLPS-Phv-0507
PHAVU_005G001300g
V7BU84
PHAVU_005G001300g
25
LLPS-Phv-0594
PHAVU_005G055300g
V7BTH5
PHAVU_005G055300g
26
LLPS-Phv-0865
PHAVU_005G056900g
V7BW54
PHAVU_005G056900g
27
LLPS-Phv-1708
PHAVU_005G142200g
V7BWI2
PHAVU_005G142200g
28
LLPS-Phv-0011
PHAVU_005G178600g
V7BXW4
PHAVU_005G178600g
29
LLPS-Phv-0174
PHAVU_005G180000g
V7BXY1
PHAVU_005G180000g
30
LLPS-Phv-0287
PHAVU_006G038500g
V7BMZ6
PHAVU_006G038500g
31
LLPS-Phv-1738
PHAVU_006G085100g
V7BPH9
PHAVU_006G085100g
32
LLPS-Phv-0227
PHAVU_006G108000g
V7BQE5
PHAVU_006G108000g
33
LLPS-Phv-0422
PHAVU_006G175600g
V7BPY5
PHAVU_006G175600g
34
LLPS-Phv-1159
PHAVU_006G193700g
V7BT91
PHAVU_006G193700g
35
LLPS-Phv-1075
PHAVU_006G205100g
V7BQX1
PHAVU_006G205100g
36
LLPS-Phv-0792
PHAVU_006G211700g
V7BR46
PHAVU_006G211700g
37
LLPS-Phv-1112
PHAVU_006G219700g
V7BU40
PHAVU_006G219700g
38
LLPS-Phv-1204
PHAVU_007G013400g
V7BCW7
PHAVU_007G013400g
39
LLPS-Phv-0166
PHAVU_007G017000g
V7BAE8
PHAVU_007G017000g
40
LLPS-Phv-0036
PHAVU_007G017900g
V7BAF6
PHAVU_007G017900g
41
LLPS-Phv-2593
PHAVU_007G025100g
V7BDA1
PHAVU_007G025100g
42
LLPS-Phv-0038
PHAVU_007G037600g
V7BB20
PHAVU_007G037600g
43
LLPS-Phv-1086
PHAVU_007G172800g
V7BJB8
PHAVU_007G172800g
44
LLPS-Phv-1675
PHAVU_007G197400g
V7BGI9
PHAVU_007G197400g
45
LLPS-Phv-1384
PHAVU_007G207700g
V7BGT6
PHAVU_007G207700g
46
LLPS-Phv-1721
PHAVU_007G270500g
V7BMJ5
PHAVU_007G270500g
47
LLPS-Phv-0078
PHAVU_008G006500g
V7B3Z2
PHAVU_008G006500g
48
LLPS-Phv-0589
PHAVU_008G199600g
V7B7B0
PHAVU_008G199600g
49
LLPS-Phv-1600
PHAVU_008G214400g
V7B705
PHAVU_008G214400g
50
LLPS-Phv-2445
PHAVU_008G232900g
V7BBL5
PHAVU_008G232900g
51
LLPS-Phv-0462
PHAVU_008G251100g
V7BC82
PHAVU_008G251100g
52
LLPS-Phv-0481
PHAVU_008G261900g
V7B9H6
PHAVU_008G261900g
53
LLPS-Phv-0232
PHAVU_009G053700g
V7AVA9
PHAVU_009G053700g
54
LLPS-Phv-1093
PHAVU_009G093800g
V7AUN1
PHAVU_009G093800g
55
LLPS-Phv-1165
PHAVU_009G127600g
V7AV26
PHAVU_009G127600g
56
LLPS-Phv-0459
PHAVU_009G249100g
V7B380
PHAVU_009G249100g
57
LLPS-Phv-1780
PHAVU_011G006700g
V7ACU7
PHAVU_011G006700g