Pan troglodytes      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 120 genes.  Reviewed (0 or Unreviewed (120

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Pat-2330
ENSPTRG00000052729.1
A0A2I3TPN1
2
LLPS-Pat-4237
ENSPTRG00000051779.1
A0A2I3SLP2
3
LLPS-Pat-4404
ENSPTRG00000040614.2
H2RGH2
4
LLPS-Pat-1288
ENSPTRG00000020622.7
H2QWS0
AGO2
5
LLPS-Pat-1724
ENSPTRG00000042976.1
K7BS03
AKAP17A
6
LLPS-Pat-1922
ENSPTRG00000009774.6
A0A2I3TKX9
ALYREF
7
LLPS-Pat-0441
ENSPTRG00000016580.6
H2R048
ANXA10
8
LLPS-Pat-0367
ENSPTRG00000007132.5
A0A2I3T5H8
ANXA2
9
LLPS-Pat-3497
ENSPTRG00000005590.6
H2Q752
ARL6IP4
10
LLPS-Pat-4125
ENSPTRG00000015483.7
K7DR10
ATR
11
LLPS-Pat-3917
ENSPTRG00000001136.5
H2PZQ5
BCAS2
12
LLPS-Pat-1995
ENSPTRG00000021465.7
H2QY12
C9H9orf78
13
LLPS-Pat-4120
ENSPTRG00000010485.5
H2R0U4
CARM1
14
LLPS-Pat-2643
ENSPTRG00000009115.6
A0A2I3S047
CASC3
15
LLPS-Pat-1132
ENSPTRG00000015563.5
H2QNM8
CCNL1
16
LLPS-Pat-0082
ENSPTRG00000018224.6
K7CZC3
CDC5L
17
LLPS-Pat-2576
ENSPTRG00000002528.6
H2R7P8
CDK1
18
LLPS-Pat-2199
ENSPTRG00000016946.4
A0A2I3S9X0
CDK7
19
LLPS-Pat-1661
ENSPTRG00000021398.5
H2QXX8
CDK9
20
LLPS-Pat-2877
ENSPTRG00000021711.6
A0A2J8IZ55
CDKL5
21
LLPS-Pat-1860
ENSPTRG00000001419.6
H2R8K9
CLK2
22
LLPS-Pat-0812
ENSPTRG00000001711.6
H2R8E1
COP1
23
LLPS-Pat-1404
ENSPTRG00000017401.6
A0A2I3RLP7
CSNK1A1
24
LLPS-Pat-3483
ENSPTRG00000023688.6
A0A2I3TNK7
CTNNBL1
25
LLPS-Pat-2506
ENSPTRG00000032509.4
P60024
DDX39B
26
LLPS-Pat-2515
ENSPTRG00000017248.6
A0A2I3SWS8
DDX46
27
LLPS-Pat-3117
ENSPTRG00000014073.6
H2QL93
DGCR8
28
LLPS-Pat-2263
ENSPTRG00000010594.5
K7DG97
DNAJB1
29
LLPS-Pat-1342
ENSPTRG00000006929.5
H2Q969
DNAJC17
30
LLPS-Pat-3411
ENSPTRG00000001914.6
H2Q103
DYRK3
31
LLPS-Pat-2340
ENSPTRG00000016367.5
H2QQ13
EGF
32
LLPS-Pat-0098
ENSPTRG00000006482.4
H2Q8I5
ERH
33
LLPS-Pat-2846
ENSPTRG00000009217.4
A0A2I3RYT0
EZH1
34
LLPS-Pat-1691
ENSPTRG00000004193.6
A0A2I3S6T1
FAM76B
35
LLPS-Pat-0765
ENSPTRG00000030909.3
H2R9M6
FAM83H
36
LLPS-Pat-2787
ENSPTRG00000014609.5
H2QM16
FANCD2
37
LLPS-Pat-2022
ENSPTRG00000007430.7
H2QA18
FANCI
38
LLPS-Pat-4435
ENSPTRG00000018889.6
H2QU48
FBXL18
39
LLPS-Pat-3980
ENSPTRG00000020176.7
A0A2I3RMA9
FGFR1
40
LLPS-Pat-0912
ENSPTRG00000044235.1
K7D3G4
FRMD8
41
LLPS-Pat-1614
ENSPTRG00000008038.6
H2RA80
FUS
42
LLPS-Pat-1652
ENSPTRG00000015796.5
H2QP19
FYTTD1
43
LLPS-Pat-0152
ENSPTRG00000019117.5
H2QUH1
GLI3
44
LLPS-Pat-1452
ENSPTRG00000015264.6
A0A2I3SXI2
GSK3B
45
LLPS-Pat-0432
ENSPTRG00000006419.5
H2Q8F3
HIF1A
46
LLPS-Pat-4724
ENSPTRG00000011180.6
A0A2I3TR97
HIF3A
47
LLPS-Pat-1370
ENSPTRG00000019758.6
H2QVH2
HIPK2
48
LLPS-Pat-1802
ENSPTRG00000049417.1
A5A6H4
HNRNPA1
49
LLPS-Pat-3336
ENSPTRG00000019002.6
H2QUA8
HNRNPA2B1
50
LLPS-Pat-0821
ENSPTRG00000048500.1
K7C562
HNRNPK
51
LLPS-Pat-3342
ENSPTRG00000005760.7
H2Q7D9
HSPH1
52
LLPS-Pat-3219
ENSPTRG00000050123.1
A0A2I3TAR9
ILF2
53
LLPS-Pat-2927
ENSPTRG00000010480.7
K7DTQ9
ILF3
54
LLPS-Pat-2556
ENSPTRG00000001779.7
K7CRZ0
IVNS1ABP
55
LLPS-Pat-1735
ENSPTRG00000039382.2
G2HEW9
KPNA2
56
LLPS-Pat-3013
ENSPTRG00000007533.5
H2QA70
LUC7L
57
LLPS-Pat-3872
ENSPTRG00000000753.6
H2PZ22
MAGOH
58
LLPS-Pat-4193
ENSPTRG00000012043.6
A0A2J8KUL5
NAGK
59
LLPS-Pat-0498
ENSPTRG00000022233.4
K7CNN0
NKAP
60
LLPS-Pat-2706
ENSPTRG00000022010.6
H2QYS5
NONO
61
LLPS-Pat-2469
ENSPTRG00000011304.4
H2QGV5
NOSIP
62
LLPS-Pat-0250
ENSPTRG00000021357.6
H2QXV6
NR5A1
63
LLPS-Pat-3575
ENSPTRG00000008957.5
H2QCL0
NSRP1
64
LLPS-Pat-0700
ENSPTRG00000001897.5
H2Q0Z2
NUAK2
65
LLPS-Pat-1814
ENSPTRG00000003791.4
H2Q3X3
NXF1
66
LLPS-Pat-2347
ENSPTRG00000014593.7
H2QM07
OGG1
67
LLPS-Pat-3063
ENSPTRG00000012025.5
H2QI21
PCBP1
68
LLPS-Pat-0792
ENSPTRG00000016533.6
G2HFK3
PLRG1
69
LLPS-Pat-3645
ENSPTRG00000006293.4
H2Q879
PNN
70
LLPS-Pat-2826
ENSPTRG00000012617.7
K7CCQ0
PPIG
71
LLPS-Pat-0515
ENSPTRG00000003724.5
A0A2I3TJG2
PRPF19
72
LLPS-Pat-0388
ENSPTRG00000039576.2
K7DMH6
PRPF8
73
LLPS-Pat-4143
ENSPTRG00000006390.5
H2Q8D7
PSMA3
74
LLPS-Pat-1097
ENSPTRG00000005677.7
H2Q790
PSPC1
75
LLPS-Pat-1258
ENSPTRG00000010165.6
A0A2I3SHF2
PTBP1
76
LLPS-Pat-0984
ENSPTRG00000021490.6
A0A2I3SBV7
RAPGEF1
77
LLPS-Pat-0387
ENSPTRG00000002265.6
A0A2I3T1W0
RBM17
78
LLPS-Pat-2398
ENSPTRG00000006151.7
K7DIC9
RBM23
79
LLPS-Pat-0206
ENSPTRG00000022269.7
K7D0L8
RBMX2
80
LLPS-Pat-2850
ENSPTRG00000007620.4
H2QAB6
RNF151
81
LLPS-Pat-1772
ENSPTRG00000031310.3
A0A2I3RR01
RNPS1
82
LLPS-Pat-0202
ENSPTRG00000029747.3
H2Q665
SARNP
83
LLPS-Pat-3147
ENSPTRG00000003846.6
A0A2I3TK70
SF1
84
LLPS-Pat-2233
ENSPTRG00000014240.6
H2R708
SF3A1
85
LLPS-Pat-1556
ENSPTRG00000010227.4
H2QEW0
SF3A2
86
LLPS-Pat-0185
ENSPTRG00000000559.5
G2HJ63
SF3A3
87
LLPS-Pat-0576
ENSPTRG00000000518.7
A0A2I3RZ14
SFPQ
88
LLPS-Pat-3536
ENSPTRG00000007199.3
A0A2I3TN10
SMAD3
89
LLPS-Pat-0076
ENSPTRG00000012230.6
H2QIC8
SNRNP200
90
LLPS-Pat-1663
ENSPTRG00000023573.5
H2RDZ4
SNRNP35
91
LLPS-Pat-0454
ENSPTRG00000011277.6
H2R5X1
SNRNP70
92
LLPS-Pat-1670
ENSPTRG00000011007.4
H2QGD2
SNRPA
93
LLPS-Pat-1799
ENSPTRG00000007513.6
H2R145
SNRPA1
94
LLPS-Pat-3213
ENSPTRG00000013271.5
A0A2J8MSX5
SNRPB2
95
LLPS-Pat-3135
ENSPTRG00000013872.6
H2RAJ1
SON
96
LLPS-Pat-3009
ENSPTRG00000009380.4
H2QDD5
SPOP
97
LLPS-Pat-2353
ENSPTRG00000007662.7
A0A2I3SBS9
SRRM2
98
LLPS-Pat-1059
ENSPTRG00000049077.1
A0A2I3TPA5
SRSF1
99
LLPS-Pat-1620
ENSPTRG00000044753.1
H2R9C4
SRSF10
100
LLPS-Pat-0064
ENSPTRG00000000852.6
H2R8Z8
SRSF11
101
LLPS-Pat-1609
ENSPTRG00000009692.7
Q5R1W5
SRSF2
102
LLPS-Pat-0939
ENSPTRG00000018106.6
A0A2I3RXN3
SRSF3
103
LLPS-Pat-1697
ENSPTRG00000000445.4
H2PYI1
SRSF4
104
LLPS-Pat-1277
ENSPTRG00000011851.6
H2QHS3
SRSF7
105
LLPS-Pat-1994
ENSPTRG00000005535.4
H2Q712
SRSF9
106
LLPS-Pat-0992
ENSPTRG00000009200.6
A0A2I3TQ88
STAT3
107
LLPS-Pat-1601
ENSPTRG00000012817.6
A0A2I3TI94
SUMO1
108
LLPS-Pat-4151
ENSPTRG00000018023.5
H2R2Q4
TAP1
109
LLPS-Pat-3482
ENSPTRG00000021182.5
A0A2I3S7X1
TGFBR1
110
LLPS-Pat-1395
ENSPTRG00000015707.7
H2QNW6
TRA2B
111
LLPS-Pat-2114
ENSPTRG00000015652.6
H2QNS9
TTC14
112
LLPS-Pat-4628
ENSPTRG00000010860.5
A0A2I3SH06
U2AF1L4
113
LLPS-Pat-2936
ENSPTRG00000011523.5
K6ZG02
U2AF2
114
LLPS-Pat-1875
ENSPTRG00000015489.7
H2QNJ0
U2SURP
115
LLPS-Pat-3741
ENSPTRG00000011962.6
H2R0K9
XPO1
116
LLPS-Pat-3229
ENSPTRG00000016105.5
H2RA35
YTHDC1
117
LLPS-Pat-3116
ENSPTRG00000001876.6
A0A2J8QWF6
ZC3H11A
118
LLPS-Pat-4003
ENSPTRG00000006974.6
K7DGJ5
ZNF106
119
LLPS-Pat-3616
ENSPTRG00000016842.6
A0A2I3RGZ6
ZNF131
120
LLPS-Pat-1456
ENSPTRG00000041892.2
A0A2I3TTM6
ZNF688