Ovis aries      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 102 genes.  Reviewed (0 or Unreviewed (102

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Ova-0538
ENSOARG00000018359.1
W5QBE3
2
LLPS-Ova-1188
ENSOARG00000002203.1
W5NVY0
3
LLPS-Ova-2851
ENSOARG00000002384.1
W5NWH6
4
LLPS-Ova-3560
ENSOARG00000003763.1
W5P0S5
AGO2
5
LLPS-Ova-3442
ENSOARG00000007961.1
W5PDN0
AKAP17A
6
LLPS-Ova-1641
ENSOARG00000017932.1
W5Q952
ALYREF
7
LLPS-Ova-3156
ENSOARG00000015584.1
W5Q1X9
ANXA10
8
LLPS-Ova-0999
ENSOARG00000020821.1
A2SW69
ANXA2
9
LLPS-Ova-1829
ENSOARG00000007010.1
W5PAQ2
ARL6IP4
10
LLPS-Ova-1593
ENSOARG00000006192.1
W5P8B0
ATR
11
LLPS-Ova-4399
ENSOARG00000008394.1
W5PEY7
C9orf78
12
LLPS-Ova-0435
ENSOARG00000017317.1
W5Q798
CARM1
13
LLPS-Ova-1428
ENSOARG00000013239.1
W5PUQ8
CASC3
14
LLPS-Ova-0038
ENSOARG00000002811.1
W5NXV0
CCNL1
15
LLPS-Ova-0109
ENSOARG00000004318.1
B7U175
CDC2
16
LLPS-Ova-1307
ENSOARG00000010205.1
W5PKH2
CDC5L
17
LLPS-Ova-3530
ENSOARG00000005719.1
W5P6S6
CDK7
18
LLPS-Ova-2770
ENSOARG00000011564.1
W5PPL8
CDK9
19
LLPS-Ova-2509
ENSOARG00000013760.1
W5PWC4
CDKL5
20
LLPS-Ova-0629
ENSOARG00000004102.1
W5P1T5
CLK2
21
LLPS-Ova-2250
ENSOARG00000014362.1
W5PY83
COP1
22
LLPS-Ova-3584
ENSOARG00000005440.1
P67829
CSNK1A1
23
LLPS-Ova-0249
ENSOARG00000018097.1
W5Q9P0
CTNNBL1
24
LLPS-Ova-0989
ENSOARG00000008787.1
W5PG71
DDX39B
25
LLPS-Ova-1531
ENSOARG00000014348.1
W5PY70
DDX46
26
LLPS-Ova-2611
ENSOARG00000018063.1
W5Q9J7
DGCR8
27
LLPS-Ova-0432
ENSOARG00000005443.1
W5P5Y7
DNAJB1
28
LLPS-Ova-1360
ENSOARG00000020273.1
W5QGC3
DNAJC17
29
LLPS-Ova-1340
ENSOARG00000006176.1
W5P860
DYRK3
30
LLPS-Ova-1251
ENSOARG00000021183.1
W5QJ66
ERH
31
LLPS-Ova-0939
ENSOARG00000003316.1
W5NZD9
EZH1
32
LLPS-Ova-1399
ENSOARG00000008906.1
W5PGJ6
FAM76B
33
LLPS-Ova-0614
ENSOARG00000016436.1
W5Q4K9
FAM83H
34
LLPS-Ova-0743
ENSOARG00000005211.1
W5P596
FANCD2
35
LLPS-Ova-3927
ENSOARG00000011362.1
W5PP08
FANCI
36
LLPS-Ova-3918
ENSOARG00000003096.1
W5NYP9
FBXL18
37
LLPS-Ova-4047
ENSOARG00000014654.1
W5PZ35
FRMD8
38
LLPS-Ova-3078
ENSOARG00000020275.1
W5QGC6
FYTTD1
39
LLPS-Ova-2004
ENSOARG00000017420.1
W5Q7K7
GLI3
40
LLPS-Ova-1050
ENSOARG00000019835.1
W5QEZ9
GSK3B
41
LLPS-Ova-2494
ENSOARG00000021136.1
W5QJ16
HIF1A
42
LLPS-Ova-3384
ENSOARG00000010539.1
W5PLI5
HIF3A
43
LLPS-Ova-1615
ENSOARG00000016240.1
W5Q400
HNRNPA1
44
LLPS-Ova-2612
ENSOARG00000010132.1
W5PK95
HNRNPA2B1
45
LLPS-Ova-3711
ENSOARG00000007452.1
W5PC31
HSPA6
46
LLPS-Ova-3449
ENSOARG00000011756.1
W5PQ75
HSPH1
47
LLPS-Ova-1129
ENSOARG00000000787.1
W5NRN6
ILF2
48
LLPS-Ova-0335
ENSOARG00000016982.1
W5Q697
ILF3
49
LLPS-Ova-1282
ENSOARG00000004429.1
W5P2U3
IVNS1ABP
50
LLPS-Ova-0899
ENSOARG00000015347.1
W5Q181
KPNA2
51
LLPS-Ova-0429
ENSOARG00000000959.1
W5NS54
LOC101107265
52
LLPS-Ova-0242
ENSOARG00000008935.1
W5PGN1
LOC101123349
53
LLPS-Ova-2989
ENSOARG00000011117.1
W5PN94
LUC7L
54
LLPS-Ova-0558
ENSOARG00000006235.1
W5P8C2
MAGOH
55
LLPS-Ova-0571
ENSOARG00000011353.1
W5PNZ1
NAGK
56
LLPS-Ova-1121
ENSOARG00000013215.1
W5PUM7
NOSIP
57
LLPS-Ova-4163
ENSOARG00000009006.1
W5PGV3
NSRP1
58
LLPS-Ova-3371
ENSOARG00000003826.1
W5P0Y3
NUAK2
59
LLPS-Ova-0300
ENSOARG00000017354.1
W5Q7E6
NXF1
60
LLPS-Ova-1176
ENSOARG00000006210.1
W5P899
OGG1
61
LLPS-Ova-2745
ENSOARG00000015284.1
W5Q112
P2RY12
62
LLPS-Ova-2262
ENSOARG00000000768.1
W5NRL3
PLRG1
63
LLPS-Ova-2457
ENSOARG00000008616.1
W5PFN0
PNN
64
LLPS-Ova-0352
ENSOARG00000003174.1
W5NYY4
PPIG
65
LLPS-Ova-0502
ENSOARG00000015596.1
W5Q1Z7
PRPF19
66
LLPS-Ova-0203
ENSOARG00000013312.1
W5PV05
PRPF8
67
LLPS-Ova-4460
ENSOARG00000021109.1
W5QIY3
PSMA3
68
LLPS-Ova-1039
ENSOARG00000009416.1
W5PI41
PTBP1
69
LLPS-Ova-0079
ENSOARG00000006521.1
W5P986
RAPGEF1
70
LLPS-Ova-2549
ENSOARG00000012975.1
W5PTW8
RBM17
71
LLPS-Ova-3129
ENSOARG00000019398.1
W5QDP1
RBM23
72
LLPS-Ova-3190
ENSOARG00000017019.1
W5Q6C8
RNF151
73
LLPS-Ova-0322
ENSOARG00000018056.1
W5Q9J0
RNPS1
74
LLPS-Ova-0377
ENSOARG00000011218.1
W5PNJ5
SARNP
75
LLPS-Ova-3132
ENSOARG00000006849.1
W5PA79
SF3A1
76
LLPS-Ova-0732
ENSOARG00000014357.1
W5PY73
SF3A2
77
LLPS-Ova-1163
ENSOARG00000019950.1
W5QFB8
SF3A3
78
LLPS-Ova-3060
ENSOARG00000015374.1
W5Q1B2
SF3B1
79
LLPS-Ova-0769
ENSOARG00000013949.1
W5PWZ8
SNRNP200
80
LLPS-Ova-2780
ENSOARG00000004583.1
W5P3A3
SNRNP35
81
LLPS-Ova-1853
ENSOARG00000006963.1
B2LYL4
SNRPA
82
LLPS-Ova-1470
ENSOARG00000016703.1
W5Q5E9
SNRPA1
83
LLPS-Ova-0015
ENSOARG00000012223.1
W5PRM1
SNRPB2
84
LLPS-Ova-0786
ENSOARG00000013038.1
W5PU43
SON
85
LLPS-Ova-3779
ENSOARG00000005902.1
W5P7C3
SPOP
86
LLPS-Ova-0391
ENSOARG00000000491.1
W5NQR0
SRRM2
87
LLPS-Ova-3115
ENSOARG00000008323.1
W5PEQ9
SRSF1
88
LLPS-Ova-0286
ENSOARG00000011887.1
W5PQL2
SRSF11
89
LLPS-Ova-3389
ENSOARG00000013584.1
B0FZL9
SRSF3
90
LLPS-Ova-1572
ENSOARG00000008771.1
W5PG50
SRSF7
91
LLPS-Ova-1795
ENSOARG00000012402.1
W5PS55
SRSF9
92
LLPS-Ova-0297
ENSOARG00000017555.1
W5Q7Z8
SUMO1
93
LLPS-Ova-0201
ENSOARG00000010971.1
W5PMT5
TGFBR1
94
LLPS-Ova-0759
ENSOARG00000020552.1
W5QH84
TRA2B
95
LLPS-Ova-1095
ENSOARG00000020682.1
W5QHM9
TTC14
96
LLPS-Ova-0640
ENSOARG00000001091.1
W5NSJ7
U2AF2
97
LLPS-Ova-3476
ENSOARG00000005871.1
W5P797
U2SURP
98
LLPS-Ova-0682
ENSOARG00000020174.1
W5QG19
XPO1
99
LLPS-Ova-0690
ENSOARG00000008633.1
W5PFP8
YTHDC1
100
LLPS-Ova-1675
ENSOARG00000001858.1
W5NUV7
ZC3H11A
101
LLPS-Ova-0468
ENSOARG00000020510.1
W5QH36
ZNF106
102
LLPS-Ova-1022
ENSOARG00000008729.1
W5PG05
ZNF131