Oryza punctata      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 57 genes.  Reviewed (0 or Unreviewed (57

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Orp-0012
OPUNC03G29170
A0A0E0KI95
2
LLPS-Orp-0013
OPUNC03G28240
A0A0E0KHX3
3
LLPS-Orp-0015
OPUNC07G03430
A0A0E0LHA2
4
LLPS-Orp-0034
OPUNC02G02860
A0A0E0JVG4
5
LLPS-Orp-0042
OPUNC03G27070
A0A0E0KHH2
6
LLPS-Orp-0053
OPUNC02G21670
A0A0E0K2A8
7
LLPS-Orp-0130
OPUNC07G21330
A0A0E0LNJ2
8
LLPS-Orp-0153
OPUNC02G32560
A0A0E0K642
9
LLPS-Orp-0155
OPUNC06G04280
A0A0E0L8C4
10
LLPS-Orp-0248
OPUNC03G13590
A0A0E0KCL3
11
LLPS-Orp-0266
OPUNC01G10270
A0A0E0JGR5
12
LLPS-Orp-0362
OPUNC06G10220
A0A0E0LAD9
13
LLPS-Orp-0415
OPUNC02G09280
A0A0E0JXW9
14
LLPS-Orp-0431
OPUNC10G13740
A0A0E0M9I9
15
LLPS-Orp-0470
OPUNC11G17230
A0A0E0MHH2
16
LLPS-Orp-0475
OPUNC01G18690
A0A0E0JJP1
17
LLPS-Orp-0498
OPUNC07G24340
A0A0E0LPM4
18
LLPS-Orp-0499
OPUNC04G06960
A0A0E0KPA0
19
LLPS-Orp-0534
OPUNC03G11620
A0A0E0KBU1
20
LLPS-Orp-0545
OPUNC03G16130
A0A0E0KDH5
21
LLPS-Orp-0566
OPUNC04G22270
A0A0E0KUZ4
22
LLPS-Orp-0597
OPUNC09G11060
A0A0E0M1Z9
23
LLPS-Orp-0610
OPUNC02G00220
A0A0E0JUG9
24
LLPS-Orp-0734
OPUNC01G09410
A0A0E0JGF2
25
LLPS-Orp-0797
OPUNC06G25400
A0A0E0LFT2
26
LLPS-Orp-0847
OPUNC02G18160
A0A0E0K101
27
LLPS-Orp-0883
OPUNC02G30520
A0A0E0K5F5
28
LLPS-Orp-0914
OPUNC03G38730
A0A0E0KLT2
29
LLPS-Orp-0965
OPUNC06G01470
A0A0E0L787
30
LLPS-Orp-0988
OPUNC01G21310
A0A0E0JKL7
31
LLPS-Orp-0993
OPUNC03G34000
A0A0E0KK14
32
LLPS-Orp-1030
OPUNC10G00620
A0A0E0M519
33
LLPS-Orp-1139
OPUNC03G11060
A0A0E0KBL4
34
LLPS-Orp-1196
OPUNC02G21360
A0A0E0K260
35
LLPS-Orp-1226
OPUNC05G13340
A0A0E0L246
36
LLPS-Orp-1275
OPUNC06G25380
A0A0E0LFS9
37
LLPS-Orp-1377
OPUNC02G35580
A0A0E0K7B6
38
LLPS-Orp-1478
OPUNC03G36610
A0A0E0KKY9
39
LLPS-Orp-1520
OPUNC02G05330
A0A0E0JWD6
40
LLPS-Orp-1565
OPUNC03G12240
A0A0E0KC31
41
LLPS-Orp-1646
OPUNC10G10920
A0A0E0M8H4
42
LLPS-Orp-1648
OPUNC07G02960
A0A0E0LH50
43
LLPS-Orp-1665
OPUNC04G11450
A0A0E0KQY5
44
LLPS-Orp-1677
OPUNC08G03430
A0A0E0LRH5
45
LLPS-Orp-1721
OPUNC09G14680
A0A0E0M3B9
46
LLPS-Orp-1742
OPUNC02G31500
A0A0E0K5R3
47
LLPS-Orp-1745
OPUNC01G33610
A0A0E0JQ28
48
LLPS-Orp-1830
OPUNC07G04820
A0A0E0LHS6
49
LLPS-Orp-1879
OPUNC01G13060
A0A0E0JHS3
50
LLPS-Orp-1924
OPUNC04G08430
A0A0E0KPS2
51
LLPS-Orp-1947
OPUNC03G17480
A0A0E0KE09
52
LLPS-Orp-1970
OPUNC03G12080
A0A0E0KC09
53
LLPS-Orp-1987
OPUNC05G25650
A0A0E0L6K9
54
LLPS-Orp-2042
OPUNC12G14960
A0A0E0MNU7
55
LLPS-Orp-2126
OPUNC03G16270
A0A0E0KDJ5
56
LLPS-Orp-2159
OPUNC03G18030
A0A0E0KE87
57
LLPS-Orp-2382
OPUNC07G24440
A0A0E0LPN8