Oryza nivara      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 58 genes.  Reviewed (0 or Unreviewed (58

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Orni-0000
ONIVA03G33530
A0A0E0GSW9
2
LLPS-Orni-0042
ONIVA03G17880
A0A0E0GM73
3
LLPS-Orni-0047
ONIVA02G07080
A0A0E0G2I4
4
LLPS-Orni-0096
ONIVA03G17700
A0A0E0GM53
5
LLPS-Orni-0099
ONIVA06G15340
A0A0E0HQ19
6
LLPS-Orni-0100
ONIVA02G41220
A0A0E0GFC5
7
LLPS-Orni-0132
ONIVA01G21670
A0A0E0FN03
8
LLPS-Orni-0133
ONIVA08G03610
A0A0E0I7H0
9
LLPS-Orni-0197
ONIVA01G48150
A0A0E0FY34
10
LLPS-Orni-0253
ONIVA03G19290
A0A0E0GMQ3
11
LLPS-Orni-0281
ONIVA02G11470
A0A0E0G474
12
LLPS-Orni-0284
ONIVA05G09380
A0A0E0HBL1
13
LLPS-Orni-0365
ONIVA11G20650
A0A0E0J4M3
14
LLPS-Orni-0371
ONIVA01G50680
A0A0E0FZ36
15
LLPS-Orni-0385
ONIVA03G12700
A0A0E0GK88
16
LLPS-Orni-0469
ONIVA04G06780
A0A0E0GZD4
17
LLPS-Orni-0477
ONIVA04G23930
A0A0E0H5S0
18
LLPS-Orni-0488
ONIVA03G13820
A0A0E0GKQ7
19
LLPS-Orni-0503
ONIVA06G08810
A0A0E0HMS9
20
LLPS-Orni-0504
ONIVA03G30980
A0A0E0GRW5
21
LLPS-Orni-0549
ONIVA06G12420
A0A0E0HP01
22
LLPS-Orni-0628
ONIVA01G11460
A0A0E0FJA2
23
LLPS-Orni-0629
ONIVA03G42370
A0A0E0GW90
24
LLPS-Orni-0697
ONIVA01G18700
A0A0E0FLW6
25
LLPS-Orni-0706
ONIVA03G32320
A0A0E0GSF8
26
LLPS-Orni-0783
ONIVA05G04750
A0A0E0HA11
27
LLPS-Orni-0834
ONIVA02G38840
A0A0E0GED7
28
LLPS-Orni-0957
ONIVA07G25650
A0A0E0I5K0
29
LLPS-Orni-0970
ONIVA07G03780
A0A0E0HXC9
30
LLPS-Orni-1038
ONIVA10G12410
A0A0E0IT74
31
LLPS-Orni-1152
ONIVA02G36140
A0A0E0GDD6
32
LLPS-Orni-1154
ONIVA02G26640
A0A0E0G9S0
33
LLPS-Orni-1182
ONIVA03G20830
A0A0E0GN97
34
LLPS-Orni-1209
ONIVA02G22190
A0A0E0G817
35
LLPS-Orni-1212
ONIVA01G39620
A0A0E0FUR4
36
LLPS-Orni-1242
ONIVA06G30790
A0A0E0HVP4
37
LLPS-Orni-1250
ONIVA04G08130
A0A0E0GZU7
38
LLPS-Orni-1274
ONIVA04G11740
A0A0E0H176
39
LLPS-Orni-1380
ONIVA06G01910
A0A0E0HK92
40
LLPS-Orni-1449
ONIVA03G41320
A0A0E0GVV6
41
LLPS-Orni-1464
ONIVA02G26550
A0A0E0G9Q7
42
LLPS-Orni-1486
ONIVA12G11470
A0A0E0JA35
43
LLPS-Orni-1508
ONIVA01G12860
A0A0E0FJR9
44
LLPS-Orni-1538
ONIVA05G15730
A0A0E0HDY2
45
LLPS-Orni-1676
ONIVA07G22100
A0A0E0I472
46
LLPS-Orni-1708
ONIVA02G26240
A0A0E0G9L7
47
LLPS-Orni-1807
ONIVA02G00610
A0A0E0FZY6
48
LLPS-Orni-1818
ONIVA03G13930
A0A0E0GKS1
49
LLPS-Orni-2027
ONIVA07G25550
A0A0E0I5I5
50
LLPS-Orni-2028
ONIVA11G19480
A0A0E0J476
51
LLPS-Orni-2036
ONIVA06G30780
A0A0E0HVP1
52
LLPS-Orni-2098
ONIVA01G20390
A0A0E0FMI5
53
LLPS-Orni-2108
ONIVA03G41000
A0A0E0GVR5
54
LLPS-Orni-2124
ONIVA02G03690
A0A0E0G160
55
LLPS-Orni-2160
ONIVA02G24830
A0A0E0G928
56
LLPS-Orni-2176
ONIVA01G15990
A0A0E0FKZ5
57
LLPS-Orni-2209
ONIVA09G17250
A0A0E0IM99
58
LLPS-Orni-2344
ONIVA10G01150
A0A0E0IP38