Oryza meridionalis      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 47 genes.  Reviewed (0 or Unreviewed (47

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Orm-0029
OMERI03G11330
A0A0E0CYL5
2
LLPS-Orm-0109
OMERI02G01110
A0A0E0CE45
3
LLPS-Orm-0129
OMERI08G03670
A0A0E0EI70
4
LLPS-Orm-0139
OMERI06G27790
A0A0E0E6I2
5
LLPS-Orm-0196
OMERI02G04520
A0A0E0CFK4
6
LLPS-Orm-0218
OMERI03G14910
A0A0E0D080
7
LLPS-Orm-0228
OMERI05G15940
A0A0E0DS41
8
LLPS-Orm-0272
OMERI08G15900
A0A0E0EN04
9
LLPS-Orm-0294
OMERI01G10400
A0A0E0C0D0
10
LLPS-Orm-0307
OMERI09G10070
A0A0E0ESX7
11
LLPS-Orm-0347
OMERI11G18890
A0A0E0F8L9
12
LLPS-Orm-0353
OMERI03G11870
A0A0E0CYV1
13
LLPS-Orm-0363
OMERI02G07460
A0A0E0CGW5
14
LLPS-Orm-0465
OMERI08G14700
A0A0E0EMJ2
15
LLPS-Orm-0472
OMERI01G19370
A0A0E0C411
16
LLPS-Orm-0485
OMERI03G17320
A0A0E0D192
17
LLPS-Orm-0537
OMERI03G27140
A0A0E0D542
18
LLPS-Orm-0680
OMERI02G32430
A0A0E0CS20
19
LLPS-Orm-0747
OMERI02G11300
A0A0E0CIG7
20
LLPS-Orm-0780
OMERI04G06530
A0A0E0DCD0
21
LLPS-Orm-0854
OMERI03G19220
A0A0E0D201
22
LLPS-Orm-0899
OMERI06G12460
A0A0E0E0I1
23
LLPS-Orm-0940
OMERI04G20410
A0A0E0DI30
24
LLPS-Orm-0946
OMERI01G08860
A0A0E0BZR9
25
LLPS-Orm-0970
OMERI03G36290
A0A0E0D902
26
LLPS-Orm-1006
OMERI05G06080
A0A0E0DN84
27
LLPS-Orm-1013
OMERI03G12820
A0A0E0CZA5
28
LLPS-Orm-1039
OMERI10G09550
A0A0E0EYQ7
29
LLPS-Orm-1067
OMERI02G09070
A0A0E0CHK5
30
LLPS-Orm-1087
OMERI03G26040
A0A0E0D4L3
31
LLPS-Orm-1179
OMERI10G00710
A0A0E0EVC6
32
LLPS-Orm-1263
OMERI06G06730
A0A0E0DY42
33
LLPS-Orm-1305
OMERI07G22550
A0A0E0EG11
34
LLPS-Orm-1416
OMERI04G07710
A0A0E0DCR8
35
LLPS-Orm-1489
OMERI07G01590
A0A0E0E7D0
36
LLPS-Orm-1493
OMERI06G08800
A0A0E0DYZ4
37
LLPS-Orm-1526
OMERI03G28680
A0A0E0D5Q9
38
LLPS-Orm-1575
OMERI04G09420
A0A0E0DDD4
39
LLPS-Orm-1587
OMERI03G38340
A0A0E0D9S6
40
LLPS-Orm-1618
OMERI02G06970
A0A0E0CGN1
41
LLPS-Orm-1672
OMERI03G16400
A0A0E0D0Y2
42
LLPS-Orm-1800
OMERI01G31940
A0A0E0C9B3
43
LLPS-Orm-1866
OMERI01G19630
A0A0E0C446
44
LLPS-Orm-1922
OMERI10G07980
A0A0E0EY46
45
LLPS-Orm-1987
OMERI06G11500
A0A0E0E043
46
LLPS-Orm-2065
OMERI09G12020
A0A0E0ETS3
47
LLPS-Orm-2127
OMERI03G15040
A0A0E0D0A1