Oryza glaberrima      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 54 genes.  Reviewed (0 or Unreviewed (54

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Org-0115
ORGLA11G0170200
I1R1R0
2
LLPS-Org-0121
ORGLA03G0159700
I1PB51
3
LLPS-Org-0131
ORGLA02G0093400
I1NYX8
4
LLPS-Org-0133
ORGLA07G0042900
I1Q8I7
5
LLPS-Org-0147
ORGLA01G0079100
I1NLQ1
6
LLPS-Org-0189
ORGLA02G0205900
I1P253
7
LLPS-Org-0235
ORGLA02G0201700
I1P211
8
LLPS-Org-0241
ORGLA02G0173500
I1P179
9
LLPS-Org-0259
ORGLA06G0235200
I1Q5D9
10
LLPS-Org-0283
ORGLA03G0173000
I1PBI4
11
LLPS-Org-0370
ORGLA01G0093500
I1NM45
12
LLPS-Org-0398
ORGLA01G0303900
I1NT49
13
LLPS-Org-0400
ORGLA08G0030500
I1QFV4
14
LLPS-Org-0413
ORGLA05G0116200
I1PUW4
15
LLPS-Org-0425
ORGLA02G0336000
I1P5V4
16
LLPS-Org-0441
ORGLA02G0295000
I1P4P4
17
LLPS-Org-0447
ORGLA06G0041600
I1PZV3
18
LLPS-Org-0510
ORGLA03G0411600
I1PIC0
19
LLPS-Org-0570
ORGLA10G0112600
I1QV93
20
LLPS-Org-0583
ORGLA01G0383100
I1PIH8
21
LLPS-Org-0611
ORGLA07G0026400
I1Q822
22
LLPS-Org-0680
ORGLA03G0284200
I1PEP6
23
LLPS-Org-0713
ORGLA03G0178800
I1PBP2
24
LLPS-Org-0784
ORGLA07G0175900
I1QCB7
25
LLPS-Org-0930
ORGLA03G0386000
I1PHL4
26
LLPS-Org-0931
ORGLA05G0131400
I1PVB6
27
LLPS-Org-0970
ORGLA03G0135700
I1PAG1
28
LLPS-Org-0977
ORGLA02G0005300
I1NWE7
29
LLPS-Org-1072
ORGLA06G0099400
I1Q1I1
30
LLPS-Org-1121
ORGLA02G0016700
I1NWR1
31
LLPS-Org-1144
ORGLA02G0056200
I1NXV6
32
LLPS-Org-1180
ORGLA03G0363100
I1PGY5
33
LLPS-Org-1198
ORGLA02G0033800
I1NX82
34
LLPS-Org-1326
ORGLA01G0148000
I1NNP0
35
LLPS-Org-1344
ORGLA12G0144900
I1R7E3
36
LLPS-Org-1389
ORGLA07G0202600
I1QD34
37
LLPS-Org-1442
ORGLA03G0122400
I1PA28
38
LLPS-Org-1464
ORGLA03G0274500
I1PEE9
39
LLPS-Org-1502
ORGLA07G0029600
I1Q854
40
LLPS-Org-1557
ORGLA04G0105900
I1PLJ0
41
LLPS-Org-1615
ORGLA02G0286900
I1P4G3
42
LLPS-Org-1685
ORGLA02G0306700
I1P511
43
LLPS-Org-1700
ORGLA09G0096600
I1QPI7
44
LLPS-Org-1758
ORGLA09G0126500
I1QQD6
45
LLPS-Org-1799
ORGLA01G0109500
I1NMK5
46
LLPS-Org-1834
ORGLA02G0346200
I1P656
47
LLPS-Org-1867
ORGLA03G0111200
I1P9R6
48
LLPS-Org-1869
ORGLA10G0006600
I1QS83
49
LLPS-Org-1910
ORGLA03G0161300
I1PB67
50
LLPS-Org-2074
ORGLA06G0235500
I1Q5E2
51
LLPS-Org-2117
ORGLA06G0016600
I1PZ54
52
LLPS-Org-2121
ORGLA01G0284600
I1NSK6
53
LLPS-Org-2142
ORGLA03G0372900
I1PH83
54
LLPS-Org-2275
ORGLA03G0121100
I1PA15