Oryctolagus cuniculus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 102 genes.  Reviewed (0 or Unreviewed (102

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Orc-0794
ENSOCUG00000024013.2
G1U1X8
2
LLPS-Orc-0814
ENSOCUG00000025891.1
G1TGC1
3
LLPS-Orc-0871
ENSOCUG00000013434.2
G1T5E2
4
LLPS-Orc-0873
ENSOCUG00000000359.3
G1SD50
5
LLPS-Orc-0985
ENSOCUG00000015977.2
G1TAM5
6
LLPS-Orc-1054
ENSOCUG00000027829.2
G1TMR9
7
LLPS-Orc-1073
ENSOCUG00000024114.1
G1U830
8
LLPS-Orc-1103
ENSOCUG00000021840.1
G1TJT9
9
LLPS-Orc-1105
ENSOCUG00000004387.3
G1SLP3
10
LLPS-Orc-1264
ENSOCUG00000008675.3
G1SVM6
11
LLPS-Orc-2852
ENSOCUG00000004516.3
G1SLY8
12
LLPS-Orc-2987
ENSOCUG00000023570.1
G1TSW1
13
LLPS-Orc-0917
ENSOCUG00000004146.3
G1SL62
ANXA2
14
LLPS-Orc-0708
ENSOCUG00000001874.3
G1SGC5
ATR
15
LLPS-Orc-1856
ENSOCUG00000016784.2
G1TCC8
BCAS2
16
LLPS-Orc-0334
ENSOCUG00000022608.1
G1TXA2
C9orf78
17
LLPS-Orc-3789
ENSOCUG00000003368.3
G1U391
CARM1
18
LLPS-Orc-1516
ENSOCUG00000002954.3
G1TNQ2
CASC3
19
LLPS-Orc-0228
ENSOCUG00000003451.2
G1SJR5
CCNL1
20
LLPS-Orc-0512
ENSOCUG00000017240.3
G1TDA7
CDC5L
21
LLPS-Orc-1235
ENSOCUG00000002858.3
G1SIH0
CDK1
22
LLPS-Orc-1418
ENSOCUG00000007519.3
G1ST86
CDK7
23
LLPS-Orc-2930
ENSOCUG00000010775.3
U3KNI5
CDKL5
24
LLPS-Orc-3470
ENSOCUG00000005463.3
G1SNZ9
COP1
25
LLPS-Orc-1351
ENSOCUG00000006669.3
P67828
CSNK1A1
26
LLPS-Orc-0935
ENSOCUG00000007161.3
G1SSH0
CTNNBL1
27
LLPS-Orc-1272
ENSOCUG00000012206.3
G1T2U6
DDX46
28
LLPS-Orc-3533
ENSOCUG00000003612.2
G1SK27
DGCR8
29
LLPS-Orc-1195
ENSOCUG00000005573.3
G1SP86
DNAJC17
30
LLPS-Orc-1936
ENSOCUG00000007421.3
G1ST08
DYRK3
31
LLPS-Orc-2215
ENSOCUG00000016388.3
G1TBJ6
EGF
32
LLPS-Orc-3160
ENSOCUG00000006045.3
G1SQ77
EZH1
33
LLPS-Orc-4245
ENSOCUG00000014549.3
G1T7M4
FAM76B
34
LLPS-Orc-1500
ENSOCUG00000002802.3
G1SIC9
FANCD2
35
LLPS-Orc-2178
ENSOCUG00000011488.3
G1T1E3
FANCI
36
LLPS-Orc-1408
ENSOCUG00000006567.3
G1U5E5
FBXL18
37
LLPS-Orc-0597
ENSOCUG00000023395.2
G1U4A0
FRMD8
38
LLPS-Orc-1770
ENSOCUG00000021526.2
G1TV19
FUS
39
LLPS-Orc-3558
ENSOCUG00000012770.3
G1T412
FYTTD1
40
LLPS-Orc-2703
ENSOCUG00000006563.3
G1SR94
GLI3
41
LLPS-Orc-0522
ENSOCUG00000014932.3
G1T8E2
GSK3B
42
LLPS-Orc-0013
ENSOCUG00000017741.3
G1TEC3
HIF1A
43
LLPS-Orc-2725
ENSOCUG00000015854.3
G1TAC9
HIPK2
44
LLPS-Orc-1100
ENSOCUG00000026859.1
G1TWL0
HNRNPA2B1
45
LLPS-Orc-0570
ENSOCUG00000010364.2
O19049
HNRNPK
46
LLPS-Orc-2356
ENSOCUG00000014773.3
G1T840
HSPH1
47
LLPS-Orc-1596
ENSOCUG00000005430.3
G1SNX5
ILF2
48
LLPS-Orc-2055
ENSOCUG00000013990.3
G1T6I6
ILF3
49
LLPS-Orc-0851
ENSOCUG00000011491.2
G1T1E0
IVNS1ABP
50
LLPS-Orc-0623
ENSOCUG00000015913.2
G1TAI0
KPNA2
51
LLPS-Orc-1460
ENSOCUG00000025110.1
G1TKN7
LOC100352197
52
LLPS-Orc-3021
ENSOCUG00000022039.2
G1TI59
LOC100353812
53
LLPS-Orc-0760
ENSOCUG00000016690.3
G1TC61
LOC100359337
54
LLPS-Orc-1083
ENSOCUG00000000129.3
G1SCN3
LUC7L
55
LLPS-Orc-3525
ENSOCUG00000008901.3
G1SW44
NAGK
56
LLPS-Orc-1832
ENSOCUG00000021848.1
G1TJW3
NONO
57
LLPS-Orc-3649
ENSOCUG00000007848.3
G1STY1
NR5A1
58
LLPS-Orc-3271
ENSOCUG00000000155.3
G1SCQ3
NSRP1
59
LLPS-Orc-1407
ENSOCUG00000002318.3
G1SHA1
NUAK2
60
LLPS-Orc-0776
ENSOCUG00000009503.2
G1SXC8
NXF1
61
LLPS-Orc-1146
ENSOCUG00000027633.1
G1THY4
P2RY12
62
LLPS-Orc-3527
ENSOCUG00000016174.2
G1SVP9
PABPN1
63
LLPS-Orc-2093
ENSOCUG00000003634.2
O19048
PCBP1
64
LLPS-Orc-1291
ENSOCUG00000011223.3
G1T0W1
PLRG1
65
LLPS-Orc-2938
ENSOCUG00000002176.3
G1SGZ7
PNN
66
LLPS-Orc-0173
ENSOCUG00000011084.3
G1TJ21
PPIG
67
LLPS-Orc-2877
ENSOCUG00000015689.3
G1TA04
PRPF19
68
LLPS-Orc-0537
ENSOCUG00000000081.3
G1SCK0
PRPF8
69
LLPS-Orc-4013
ENSOCUG00000010316.3
G1SZ14
PSMA3
70
LLPS-Orc-1522
ENSOCUG00000006153.3
G1SQF9
PSPC1
71
LLPS-Orc-2728
ENSOCUG00000002006.3
G1SGL7
RBM23
72
LLPS-Orc-3110
ENSOCUG00000011809.2
G1T209
RBMX2
73
LLPS-Orc-2993
ENSOCUG00000010117.2
G1SYL9
SARNP
74
LLPS-Orc-1282
ENSOCUG00000026486.2
G1U7X2
SF1
75
LLPS-Orc-2450
ENSOCUG00000007633.3
G1STH0
SF3A1
76
LLPS-Orc-0103
ENSOCUG00000005407.2
G1SNV4
SF3A3
77
LLPS-Orc-0147
ENSOCUG00000012722.3
G1TVG7
SF3B1
78
LLPS-Orc-1693
ENSOCUG00000001877.2
G1SGB5
SFPQ
79
LLPS-Orc-0465
ENSOCUG00000009864.3
G1SY30
SNRNP200
80
LLPS-Orc-3091
ENSOCUG00000021248.1
G1TIG4
SNRNP35
81
LLPS-Orc-1648
ENSOCUG00000015081.3
G1T8P3
SNRNP70
82
LLPS-Orc-0603
ENSOCUG00000024618.1
G1TKL0
SNRPA
83
LLPS-Orc-2459
ENSOCUG00000017417.2
G1TDN3
SNRPA1
84
LLPS-Orc-0992
ENSOCUG00000001427.3
G1SFE6
SNRPB2
85
LLPS-Orc-1698
ENSOCUG00000003867.2
G1SKK9
SON
86
LLPS-Orc-2614
ENSOCUG00000016723.3
G1TC83
SPOP
87
LLPS-Orc-0943
ENSOCUG00000014415.3
G1T7D0
SRRM2
88
LLPS-Orc-0704
ENSOCUG00000017678.3
G1TE69
SRSF1
89
LLPS-Orc-2381
ENSOCUG00000006684.3
G1SRH7
SRSF3
90
LLPS-Orc-1640
ENSOCUG00000001837.3
G1TTB5
SRSF4
91
LLPS-Orc-2053
ENSOCUG00000004087.3
G1SL16
SRSF7
92
LLPS-Orc-1151
ENSOCUG00000011034.3
G1T0H3
STAT3
93
LLPS-Orc-1960
ENSOCUG00000016292.3
G1TBB8
TGFBR1
94
LLPS-Orc-1823
ENSOCUG00000008940.3
G1U9B4
TRA2B
95
LLPS-Orc-0909
ENSOCUG00000000806.2
G1SE43
TTC14
96
LLPS-Orc-2043
ENSOCUG00000012121.3
G1T2N4
U2SURP
97
LLPS-Orc-1777
ENSOCUG00000004986.3
G1SMY6
XPO1
98
LLPS-Orc-1010
ENSOCUG00000015886.3
G1TAG1
YTHDC1
99
LLPS-Orc-0693
ENSOCUG00000000251.3
G1SCX3
ZC3H11A
100
LLPS-Orc-0733
ENSOCUG00000016382.3
G1U4R3
ZNF106
101
LLPS-Orc-3615
ENSOCUG00000017804.3
G1TEG7
ZNF131
102
LLPS-Orc-3578
ENSOCUG00000015416.3
G1T9D5
ZNF688