Ornithorhynchus anatinus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 92 genes.  Reviewed (0 or Unreviewed (92

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Ora-0024
ENSOANG00000008347.2
F7CFC3
2
LLPS-Ora-0052
ENSOANG00000009681.4
F6SUK1
3
LLPS-Ora-0064
ENSOANG00000029886.1
K7EBM6
4
LLPS-Ora-0093
ENSOANG00000031422.1
K7E6X9
5
LLPS-Ora-0189
ENSOANG00000002863.3
F6U7Q4
6
LLPS-Ora-0314
ENSOANG00000014272.1
F6VK51
7
LLPS-Ora-0391
ENSOANG00000006705.2
F6QZ87
8
LLPS-Ora-0412
ENSOANG00000009539.2
F6TS63
9
LLPS-Ora-0421
ENSOANG00000001858.2
F7F784
10
LLPS-Ora-1074
ENSOANG00000011954.2
F7BJ00
11
LLPS-Ora-1184
ENSOANG00000008789.3
F7G8K8
12
LLPS-Ora-1191
ENSOANG00000002695.1
F6ZKB1
13
LLPS-Ora-1472
ENSOANG00000009017.3
F7EU98
14
LLPS-Ora-1508
ENSOANG00000008908.2
F7EDR5
15
LLPS-Ora-1670
ENSOANG00000002433.3
F7EYK7
16
LLPS-Ora-2055
ENSOANG00000003499.1
F7FS51
17
LLPS-Ora-2252
ENSOANG00000031916.1
K7E7Y4
18
LLPS-Ora-2307
ENSOANG00000031252.1
K7ECA5
19
LLPS-Ora-2452
ENSOANG00000020219.2
F7BMU7
20
LLPS-Ora-2479
ENSOANG00000010518.3
F6ZHL0
21
LLPS-Ora-2505
ENSOANG00000003647.2
F7FJ30
22
LLPS-Ora-2905
ENSOANG00000000413.2
F7G4S5
23
LLPS-Ora-2909
ENSOANG00000005762.2
F6V996
24
LLPS-Ora-3006
ENSOANG00000004104.2
F7BM92
25
LLPS-Ora-3260
ENSOANG00000030860.1
K7E8U7
26
LLPS-Ora-3539
ENSOANG00000003668.3
F7E702
27
LLPS-Ora-1431
ENSOANG00000007125.2
F6QQV2
AGO2
28
LLPS-Ora-2551
ENSOANG00000007455.1
F6WVJ1
ANXA10
29
LLPS-Ora-1091
ENSOANG00000012341.2
F7FNN0
ANXA2
30
LLPS-Ora-1789
ENSOANG00000010564.3
F6TAV8
ARL6IP4
31
LLPS-Ora-0877
ENSOANG00000004515.3
F7FQ59
BCAS2
32
LLPS-Ora-1831
ENSOANG00000002552.3
F7FLK6
C9orf78
33
LLPS-Ora-2716
ENSOANG00000014356.3
F6WDI4
CCNL1
34
LLPS-Ora-0271
ENSOANG00000008262.3
F6YLW9
CDC5L
35
LLPS-Ora-1736
ENSOANG00000001543.2
F7D1B6
CDK7
36
LLPS-Ora-1338
ENSOANG00000008397.2
F6XLQ3
CDK9
37
LLPS-Ora-1383
ENSOANG00000004037.2
F6UW82
CDKL5
38
LLPS-Ora-0676
ENSOANG00000000942.2
F6PJK3
COP1
39
LLPS-Ora-1195
ENSOANG00000001842.3
F7FET3
DDX46
40
LLPS-Ora-1476
ENSOANG00000031125.1
K7E6V8
DGCR8
41
LLPS-Ora-2125
ENSOANG00000012914.2
F7AXC7
DNAJB1
42
LLPS-Ora-2546
ENSOANG00000012624.2
F7FTP1
ERH
43
LLPS-Ora-1040
ENSOANG00000006566.2
F6WFW9
FBXL18
44
LLPS-Ora-3023
ENSOANG00000010526.2
F6ZGN1
FRMD8
45
LLPS-Ora-3078
ENSOANG00000005606.4
F7BAJ3
FUS
46
LLPS-Ora-0979
ENSOANG00000014284.2
F6R172
FYTTD1
47
LLPS-Ora-3085
ENSOANG00000010699.4
F6SDJ7
GLI3
48
LLPS-Ora-1866
ENSOANG00000001670.2
F7GCK3
GSK3B
49
LLPS-Ora-3314
ENSOANG00000009092.3
F7G7B7
HIF1A
50
LLPS-Ora-1226
ENSOANG00000009159.4
F7EJK5
HNRNPA2B1
51
LLPS-Ora-2265
ENSOANG00000014612.3
F7EHL0
HNRNPK
52
LLPS-Ora-1530
ENSOANG00000015474.2
F7BZZ8
HSPH1
53
LLPS-Ora-2817
ENSOANG00000001014.3
F6R9Q9
IVNS1ABP
54
LLPS-Ora-0355
ENSOANG00000008048.3
F6RK29
KPNA2
55
LLPS-Ora-1467
ENSOANG00000031889.1
K7E9L5
LOC100090750
56
LLPS-Ora-1813
ENSOANG00000009218.2
F7G6L9
LOC100091694
57
LLPS-Ora-3040
ENSOANG00000020444.2
F6VQ40
LOC103165068
58
LLPS-Ora-2383
ENSOANG00000012920.2
F7AWP9
NR5A1
59
LLPS-Ora-0445
ENSOANG00000012656.3
F7BTG5
NSRP1
60
LLPS-Ora-0462
ENSOANG00000013349.3
F7DYZ4
NUAK2
61
LLPS-Ora-2139
ENSOANG00000012086.3
F7FI30
OGG1
62
LLPS-Ora-3391
ENSOANG00000012173.2
F7DD13
P2RY12
63
LLPS-Ora-0200
ENSOANG00000005295.3
F7CSR0
PLRG1
64
LLPS-Ora-0072
ENSOANG00000014011.4
F6SYD1
PNN
65
LLPS-Ora-3072
ENSOANG00000008535.4
F6VT37
PPIG
66
LLPS-Ora-0810
ENSOANG00000004250.2
F7ASH6
PRPF8
67
LLPS-Ora-0361
ENSOANG00000009191.2
F7CZT7
PTBP1
68
LLPS-Ora-2988
ENSOANG00000014783.3
F7EGC8
RAPGEF1
69
LLPS-Ora-0321
ENSOANG00000015455.3
F7CND3
RBM17
70
LLPS-Ora-1355
ENSOANG00000007020.2
F7GB42
RNPS1
71
LLPS-Ora-0291
ENSOANG00000002882.3
F6SHD4
SARNP
72
LLPS-Ora-1816
ENSOANG00000002909.1
F7BUP9
SF1
73
LLPS-Ora-1785
ENSOANG00000013649.2
F7DWP9
SF3A2
74
LLPS-Ora-1542
ENSOANG00000002473.2
F6WAQ0
SF3A3
75
LLPS-Ora-2005
ENSOANG00000002697.2
F6ZK86
SNRNP35
76
LLPS-Ora-0180
ENSOANG00000005213.2
F7BFR6
SNRNP70
77
LLPS-Ora-0423
ENSOANG00000011754.3
F6T1N4
SNRPA1
78
LLPS-Ora-2459
ENSOANG00000001237.3
F6YE01
SNRPB2
79
LLPS-Ora-0833
ENSOANG00000002202.2
F6Z208
SRRM1
80
LLPS-Ora-0395
ENSOANG00000002650.3
F7B6H4
SRRM2
81
LLPS-Ora-1842
ENSOANG00000004308.2
F6TUX1
SRSF10
82
LLPS-Ora-3378
ENSOANG00000015528.3
F6W6R8
SRSF11
83
LLPS-Ora-0520
ENSOANG00000020536.2
F7EUY2
SRSF3
84
LLPS-Ora-1797
ENSOANG00000015169.3
F6V4V4
SRSF4
85
LLPS-Ora-2241
ENSOANG00000004405.3
F7BIL6
SRSF7
86
LLPS-Ora-1012
ENSOANG00000014872.3
F6X0S8
TGFBR1
87
LLPS-Ora-1456
ENSOANG00000013953.3
F7DAK4
TRA2B
88
LLPS-Ora-1388
ENSOANG00000003676.3
F7E6L3
TTC14
89
LLPS-Ora-0305
ENSOANG00000003644.3
F7FJ63
U2SURP
90
LLPS-Ora-0589
ENSOANG00000012417.3
F7DTN5
XPO1
91
LLPS-Ora-2419
ENSOANG00000014398.3
F6UK85
YTHDC1
92
LLPS-Ora-1089
ENSOANG00000001915.3
F6ZXV9
ZC3H11A