Nicotiana attenuata      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 50 genes.  Reviewed (0 or Unreviewed (50

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Nia-0438
A4A49_00824
A0A1J6J2E9
A4A49_00824
2
LLPS-Nia-1281
A4A49_00831
A0A1J6I2P8
A4A49_00831
3
LLPS-Nia-0843
A4A49_01216
A0A1J6HZK7
A4A49_01216
4
LLPS-Nia-0396
A4A49_04448
A0A1J6J017
A4A49_04448
5
LLPS-Nia-1564
A4A49_09729
A0A1J6IHB0
A4A49_09729
6
LLPS-Nia-2003
A4A49_13604
A0A1J6ITS7
A4A49_13604
7
LLPS-Nia-0349
A4A49_14745
A0A1J6IRK3
A4A49_14745
8
LLPS-Nia-1361
A4A49_17064
A0A314KVE0
A4A49_17064
9
LLPS-Nia-0913
A4A49_17087
A0A1J6IN89
A4A49_17087
10
LLPS-Nia-1107
A4A49_18385
A0A1J6IQJ8
A4A49_18385
11
LLPS-Nia-1385
A4A49_19792
A0A1J6IZI3
A4A49_19792
12
LLPS-Nia-1114
A4A49_28423
A0A314LGD4
A4A49_28423
13
LLPS-Nia-1349
A4A49_32689
A0A314KJA8
A4A49_32689
14
LLPS-Nia-0025
A4A49_37023
A0A1J6ISM3
A4A49_37023
15
LLPS-Nia-0837
A4A49_37732
A0A1J6IJQ6
A4A49_37732
16
LLPS-Nia-0638
A4A49_59775
A0A1J6IUN2
A4A49_59775
17
LLPS-Nia-2058
A4A49_36490
A0A1J6IL58
AFC1_2
18
LLPS-Nia-1606
A4A49_33062
A0A1J6KB88
ALY2_3
19
LLPS-Nia-0017
A4A49_60903
A0A1J6IIJ8
ASK5_0
20
LLPS-Nia-0163
A4A49_27514
A0A314KKH9
ATO
21
LLPS-Nia-0834
A4A49_10403
A0A1J6IHV0
BPM4_1
22
LLPS-Nia-0538
A4A49_16477
A0A314KRC7
BRR2A_3
23
LLPS-Nia-1070
A4A49_33576
A0A1J6HZR4
CDC5_0
24
LLPS-Nia-1718
A4A49_21609
A0A314KRV7
CDKD-1_1
25
LLPS-Nia-1733
A4A49_04599
A0A1J6I3V1
CLF_1
26
LLPS-Nia-0787
A4A49_35805
A0A1J6IBA4
COP1_0
27
LLPS-Nia-1919
A4A49_16898
A0A1J6JGQ8
DRT111
28
LLPS-Nia-1843
A4A49_39872
A0A1J6JU78
MOS4_0
29
LLPS-Nia-1704
A4A49_36091
A0A1J6L0A2
OGG1
30
LLPS-Nia-0809
A4A49_00249
A0A1J6IDE8
PABN2_2
31
LLPS-Nia-0544
A4A49_34626
A0A1J6IRG7
PAG1
32
LLPS-Nia-0040
A4A49_29369
A0A1J6J491
POLX_12
33
LLPS-Nia-1101
A4A49_39170
A0A1J6KD58
PRL1
34
LLPS-Nia-2266
A4A49_20781
A0A1J6IEJ0
PRMT13_1
35
LLPS-Nia-0330
A4A49_03001
A0A314LAW4
PRP19
36
LLPS-Nia-0365
A4A49_30390
A0A1J6KDF7
PRP8A_0
37
LLPS-Nia-0562
A4A49_22233
A0A1J6KX06
RH45
38
LLPS-Nia-0050
A4A49_59316
A0A314L2I8
RH56_2
39
LLPS-Nia-1363
A4A49_19198
A0A1J6INV3
RNU1
40
LLPS-Nia-1007
A4A49_04972
A0A314LES3
RRC1_0
41
LLPS-Nia-1012
A4A49_30927
A0A0M9UMS4
RSZ22A_1
42
LLPS-Nia-1287
A4A49_00887
A0A0M8KTC6
SC35
43
LLPS-Nia-2393
A4A49_32909
A0A1J6JVQ6
SCL28_0
44
LLPS-Nia-1917
A4A49_33896
A0A1J6IMS4
SNRNP35_0
45
LLPS-Nia-2169
A4A49_38046
A0A0M8KRE5
SR34_0
46
LLPS-Nia-1768
A4A49_11571
A0A0M8KRD4
SR45A_1
47
LLPS-Nia-1602
A4A49_19057
A0A314KY21
U1A
48
LLPS-Nia-0016
A4A49_36690
A0A314LB45
U2AF65A_0
49
LLPS-Nia-1341
A4A49_03057
A0A1J6IN05
U2B''
50
LLPS-Nia-1130
A4A49_61925
A0A1J6KX48
XPO1_1