Neosartorya fischeri      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 33 genes.  Reviewed (0 or Unreviewed (33

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Nef-0722
NFIA_014930
A1D308
NFIA_014930
2
LLPS-Nef-1412
NFIA_016120
A1D3C6
NFIA_016120
3
LLPS-Nef-1089
NFIA_016940
A1D3K0
NFIA_016940
4
LLPS-Nef-0779
NFIA_018240
A1D3Y0
NFIA_018240
5
LLPS-Nef-1569
NFIA_019640
A1D4B6
NFIA_019640
6
LLPS-Nef-0156
NFIA_024670
A1DC36
NFIA_024670
7
LLPS-Nef-1337
NFIA_026460
A1DCL2
NFIA_026460
8
LLPS-Nef-0312
NFIA_026520
A1DCL8
NFIA_026520
9
LLPS-Nef-0679
NFIA_026530
A1DCL9
NFIA_026530
10
LLPS-Nef-0901
NFIA_028550
A1D9E3
NFIA_028550
11
LLPS-Nef-0489
NFIA_035380
A1CZ00
NFIA_035380
12
LLPS-Nef-0977
NFIA_037540
A1CZL0
NFIA_037540
13
LLPS-Nef-1058
NFIA_039660
A1D070
NFIA_039660
14
LLPS-Nef-0469
NFIA_051690
A1DM03
NFIA_051690
15
LLPS-Nef-0582
NFIA_051980
A1DM32
NFIA_051980
16
LLPS-Nef-0653
NFIA_052140
A1DM48
NFIA_052140
17
LLPS-Nef-0990
NFIA_069020
A1D7N7
NFIA_069020
18
LLPS-Nef-1196
NFIA_070830
A1D868
NFIA_070830
19
LLPS-Nef-1465
NFIA_073070
A1DDD5
NFIA_073070
20
LLPS-Nef-0336
NFIA_073550
A1DDI2
NFIA_073550
21
LLPS-Nef-1266
NFIA_073580
A1DDI5
NFIA_073580
22
LLPS-Nef-1078
NFIA_074760
A1DDU9
NFIA_074760
23
LLPS-Nef-0995
NFIA_075370
A1DE00
NFIA_075370
24
LLPS-Nef-0839
NFIA_076260
A1DE89
NFIA_076260
25
LLPS-Nef-1320
NFIA_078760
A1DEX9
NFIA_078760
26
LLPS-Nef-0535
NFIA_082260
A1DFX2
NFIA_082260
27
LLPS-Nef-1173
NFIA_084320
A1DGH3
NFIA_084320
28
LLPS-Nef-1636
NFIA_084350
A1DGH6
NFIA_084350
29
LLPS-Nef-1388
NFIA_088960
A1DHT3
NFIA_088960
30
LLPS-Nef-0422
NFIA_097520
A1DB84
NFIA_097520
31
LLPS-Nef-0614
NFIA_104350
A1CWE5
NFIA_104350
32
LLPS-Nef-1053
NFIA_109400
A1CXU4
NFIA_109400
33
LLPS-Nef-1392
NFIA_114640
A1D970
NFIA_114640