Myotis lucifugus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 111 genes.  Reviewed (0 or Unreviewed (111

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Myl-0039
ENSMLUG00000010298.2
G1PFL0
2
LLPS-Myl-0262
ENSMLUG00000002910.2
G1NYY2
3
LLPS-Myl-0563
ENSMLUG00000005653.2
G1P590
4
LLPS-Myl-0575
ENSMLUG00000004806.2
G1P397
5
LLPS-Myl-0647
ENSMLUG00000011051.2
G1PHC6
6
LLPS-Myl-0704
ENSMLUG00000013482.2
G1PMX9
7
LLPS-Myl-0728
ENSMLUG00000011879.2
G1Q058
8
LLPS-Myl-0804
ENSMLUG00000017657.2
L7N1W5
9
LLPS-Myl-0879
ENSMLUG00000002920.2
G1NYZ4
10
LLPS-Myl-1306
ENSMLUG00000008318.2
G1PB87
11
LLPS-Myl-1702
ENSMLUG00000002302.2
G1NXJ2
12
LLPS-Myl-1798
ENSMLUG00000004098.2
G1Q3H6
13
LLPS-Myl-1878
ENSMLUG00000001084.2
L7N103
14
LLPS-Myl-1952
ENSMLUG00000006203.2
G1P6I3
15
LLPS-Myl-2359
ENSMLUG00000023995.1
G1Q1L8
16
LLPS-Myl-2536
ENSMLUG00000015217.2
G1PRT8
17
LLPS-Myl-0580
ENSMLUG00000014591.2
G1PQD4
ANXA10
18
LLPS-Myl-0293
ENSMLUG00000002464.2
G1NXX1
ANXA2
19
LLPS-Myl-2171
ENSMLUG00000016908.2
G1PVP1
ATR
20
LLPS-Myl-3533
ENSMLUG00000006899.1
G1P824
C9orf78
21
LLPS-Myl-3947
ENSMLUG00000011075.2
G1PHF0
CARM1
22
LLPS-Myl-2475
ENSMLUG00000010520.2
G1PG51
CASC3
23
LLPS-Myl-3609
ENSMLUG00000015049.2
G1PRE8
CCNL1
24
LLPS-Myl-0567
ENSMLUG00000012803.2
G1PLC9
CDC5L
25
LLPS-Myl-1203
ENSMLUG00000011641.2
G1PIQ5
CDK1
26
LLPS-Myl-3594
ENSMLUG00000002960.2
G1NZ25
CDK7
27
LLPS-Myl-4208
ENSMLUG00000006808.2
G1P7W1
CDKL5
28
LLPS-Myl-0270
ENSMLUG00000013410.2
G1PMR7
CLK2
29
LLPS-Myl-1580
ENSMLUG00000023639.1
G1QFR0
COP1
30
LLPS-Myl-0743
ENSMLUG00000012607.2
G1PKX7
DDX46
31
LLPS-Myl-2663
ENSMLUG00000017533.2
G1PX34
DGCR8
32
LLPS-Myl-0630
ENSMLUG00000012065.2
G1QEV7
DNAJB1
33
LLPS-Myl-0407
ENSMLUG00000001418.2
G1NVJ5
DYRK3
34
LLPS-Myl-1624
ENSMLUG00000015488.2
G1PSH1
EGF
35
LLPS-Myl-0565
ENSMLUG00000004048.2
G1P1J7
EZH1
36
LLPS-Myl-3301
ENSMLUG00000013608.2
G1PN80
FAM76B
37
LLPS-Myl-3243
ENSMLUG00000006190.2
G1P6H6
FANCD2
38
LLPS-Myl-2490
ENSMLUG00000007525.2
G1P9J1
FANCI
39
LLPS-Myl-3122
ENSMLUG00000003317.2
G1NZV6
FBXL18
40
LLPS-Myl-0801
ENSMLUG00000005630.2
G1P573
FYTTD1
41
LLPS-Myl-4290
ENSMLUG00000015711.2
G1PSZ5
GLI3
42
LLPS-Myl-0141
ENSMLUG00000002885.2
G1NYW2
GSK3B
43
LLPS-Myl-3849
ENSMLUG00000015244.2
G1PRW0
HIF1A
44
LLPS-Myl-3371
ENSMLUG00000014423.2
G1PQ03
HIF3A
45
LLPS-Myl-2819
ENSMLUG00000017514.2
G1PX17
HIPK2
46
LLPS-Myl-3099
ENSMLUG00000000648.2
L7N0Y9
HNRNPA1
47
LLPS-Myl-2056
ENSMLUG00000007578.2
G1P9K0
HNRNPA2B1
48
LLPS-Myl-3628
ENSMLUG00000005871.2
G1P5R3
HNRNPK
49
LLPS-Myl-1855
ENSMLUG00000001847.2
G1NWH3
ILF2
50
LLPS-Myl-1540
ENSMLUG00000008365.2
G1PBC1
ILF3
51
LLPS-Myl-1071
ENSMLUG00000014652.2
G1PQH7
IVNS1ABP
52
LLPS-Myl-1767
ENSMLUG00000027946.1
G1QDN1
KPNA2
53
LLPS-Myl-0257
ENSMLUG00000003800.2
G1P0Z9
LOC102417323
54
LLPS-Myl-0871
ENSMLUG00000026004.1
G1Q6E3
LOC102417426
55
LLPS-Myl-4496
ENSMLUG00000003899.2
G1P178
LOC102420331
56
LLPS-Myl-1672
ENSMLUG00000028527.1
G1QCT4
LOC102433304
57
LLPS-Myl-2781
ENSMLUG00000017341.2
G1PWM4
LUC7L
58
LLPS-Myl-3129
ENSMLUG00000002444.2
G1NXV4
MAGOH
59
LLPS-Myl-2550
ENSMLUG00000010244.2
G1PFI4
NAGK
60
LLPS-Myl-2165
ENSMLUG00000008310.2
G1PB93
NKAP
61
LLPS-Myl-2107
ENSMLUG00000002489.2
G1NXZ5
NONO
62
LLPS-Myl-1877
ENSMLUG00000005775.2
G1P5I6
NR5A1
63
LLPS-Myl-0892
ENSMLUG00000017469.2
G1PWX9
NSRP1
64
LLPS-Myl-0392
ENSMLUG00000011425.2
G1PI82
NUAK2
65
LLPS-Myl-3160
ENSMLUG00000011131.2
G1PHK9
NXF1
66
LLPS-Myl-1611
ENSMLUG00000012962.2
G1PLQ5
OGG1
67
LLPS-Myl-0733
ENSMLUG00000011489.2
G1PID3
P2RY12
68
LLPS-Myl-0059
ENSMLUG00000014173.1
G1PPF8
PCBP1
69
LLPS-Myl-0403
ENSMLUG00000002633.1
G1NYB2
PNN
70
LLPS-Myl-3305
ENSMLUG00000030696.1
G1PXW7
PPIG
71
LLPS-Myl-1169
ENSMLUG00000017597.2
G1PX87
PRPF19
72
LLPS-Myl-0745
ENSMLUG00000002666.2
G1NYE5
PRPF8
73
LLPS-Myl-1429
ENSMLUG00000007590.2
G1P9M0
PSMA3
74
LLPS-Myl-1499
ENSMLUG00000017663.2
G1PXE3
PSPC1
75
LLPS-Myl-1744
ENSMLUG00000003320.2
G1NZW1
PTBP1
76
LLPS-Myl-1039
ENSMLUG00000008694.2
G1PC22
RAPGEF1
77
LLPS-Myl-3489
ENSMLUG00000012923.2
G1PLL8
RBM23
78
LLPS-Myl-3126
ENSMLUG00000011679.2
G1QG05
RNF151
79
LLPS-Myl-1395
ENSMLUG00000016808.2
G1PVF5
RNPS1
80
LLPS-Myl-0419
ENSMLUG00000003565.2
G1P0G8
SARNP
81
LLPS-Myl-0413
ENSMLUG00000002139.2
G1NX67
SF3A1
82
LLPS-Myl-0825
ENSMLUG00000004426.2
G1P2E1
SF3A2
83
LLPS-Myl-1967
ENSMLUG00000000991.2
G1NUK0
SF3A3
84
LLPS-Myl-1483
ENSMLUG00000000840.2
G1NU96
SF3B1
85
LLPS-Myl-0374
ENSMLUG00000027090.1
G1QEN0
SFPQ
86
LLPS-Myl-2057
ENSMLUG00000010493.2
G1PG71
SNRNP200
87
LLPS-Myl-0153
ENSMLUG00000025311.1
G1Q407
SNRNP35
88
LLPS-Myl-0363
ENSMLUG00000011766.2
G1PJ07
SNRNP70
89
LLPS-Myl-2014
ENSMLUG00000000219.2
G1NST0
SNRPA
90
LLPS-Myl-1047
ENSMLUG00000014213.2
G1PPJ2
SNRPA1
91
LLPS-Myl-0327
ENSMLUG00000008163.2
G1PAW2
SNRPB2
92
LLPS-Myl-1549
ENSMLUG00000002449.2
G1NXW7
SON
93
LLPS-Myl-1614
ENSMLUG00000011013.2
G1PH97
SPOP
94
LLPS-Myl-0389
ENSMLUG00000014747.2
G1PQP7
SRRM2
95
LLPS-Myl-3687
ENSMLUG00000011040.2
G1PHB0
SRSF1
96
LLPS-Myl-1880
ENSMLUG00000028520.1
G1Q5H7
SRSF10
97
LLPS-Myl-3263
ENSMLUG00000026613.1
G1QEB8
SRSF2
98
LLPS-Myl-2591
ENSMLUG00000010671.2
G1PGG0
SRSF3
99
LLPS-Myl-2389
ENSMLUG00000014770.2
G1PQR5
SRSF4
100
LLPS-Myl-1667
ENSMLUG00000009536.2
G1QE75
SRSF7
101
LLPS-Myl-2630
ENSMLUG00000017449.2
G1PWW4
STAT3
102
LLPS-Myl-3094
ENSMLUG00000013880.2
G1PNT7
TAP1
103
LLPS-Myl-2109
ENSMLUG00000015003.2
G1PRA8
TGFBR1
104
LLPS-Myl-1997
ENSMLUG00000005781.2
G1P5J2
TRA2B
105
LLPS-Myl-0846
ENSMLUG00000010448.2
G1PFZ9
TTC14
106
LLPS-Myl-1313
ENSMLUG00000010670.2
G1PGH6
XPO1
107
LLPS-Myl-2583
ENSMLUG00000016300.2
G1PUB1
YTHDC1
108
LLPS-Myl-2033
ENSMLUG00000013236.2
G1PMC2
ZC3H11A
109
LLPS-Myl-0370
ENSMLUG00000022691.1
G1QF29
ZNF106
110
LLPS-Myl-3171
ENSMLUG00000017183.2
G1PWA6
ZNF131
111
LLPS-Myl-1496
ENSMLUG00000016466.2
G1PQ10
ZNF688