Meleagris gallopavo      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 86 genes.  Reviewed (0 or Unreviewed (86

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Meg-0196
ENSMGAG00000014526.2
G1NNW7
2
LLPS-Meg-0669
ENSMGAG00000001496.2
G1MRW3
3
LLPS-Meg-0834
ENSMGAG00000005653.1
H9H0V6
4
LLPS-Meg-0989
ENSMGAG00000002381.2
G1MU27
5
LLPS-Meg-1589
ENSMGAG00000007630.2
H9H1A1
6
LLPS-Meg-1734
ENSMGAG00000003239.2
G3USW7
7
LLPS-Meg-2121
ENSMGAG00000008204.2
G1N800
8
LLPS-Meg-2553
ENSMGAG00000008960.2
G1N9V8
9
LLPS-Meg-3108
ENSMGAG00000012030.2
G1NHH4
10
LLPS-Meg-3122
ENSMGAG00000012277.2
G1NI59
11
LLPS-Meg-1408
ENSMGAG00000012942.1
G1NJV1
AGO2
12
LLPS-Meg-2000
ENSMGAG00000014740.2
G1NPG3
AKAP17A
13
LLPS-Meg-1535
ENSMGAG00000004536.2
G1MZD9
ANXA2
14
LLPS-Meg-1824
ENSMGAG00000003506.2
G1MWR1
ARL6IP4
15
LLPS-Meg-1999
ENSMGAG00000006227.2
G1N3I9
ATR
16
LLPS-Meg-0467
ENSMGAG00000005128.1
G1N0Q1
C9orf78
17
LLPS-Meg-1398
ENSMGAG00000013247.1
G1NKN0
CASC3
18
LLPS-Meg-2362
ENSMGAG00000010679.1
G1NDY8
CCNL1
19
LLPS-Meg-0852
ENSMGAG00000014263.1
G1NN82
CDC5L
20
LLPS-Meg-2524
ENSMGAG00000003747.2
G3UQR4
CDK9
21
LLPS-Meg-0676
ENSMGAG00000014674.2
G1NPA2
CDKL5
22
LLPS-Meg-1494
ENSMGAG00000000734.2
G1MPY5
CLK2
23
LLPS-Meg-1235
ENSMGAG00000002304.1
G1MTW7
COP1
24
LLPS-Meg-0075
ENSMGAG00000003711.1
G1MXD2
CTNNBL1
25
LLPS-Meg-0542
ENSMGAG00000008226.2
G1N866
DDX46
26
LLPS-Meg-1038
ENSMGAG00000001534.2
G1MRY9
DGCR8
27
LLPS-Meg-0626
ENSMGAG00000002902.1
G1MVB2
DNAJC17
28
LLPS-Meg-0730
ENSMGAG00000003702.2
G1MX88
DYRK3
29
LLPS-Meg-2804
ENSMGAG00000011026.1
G1NEX1
EGF
30
LLPS-Meg-0401
ENSMGAG00000011847.1
G1NH16
ERH
31
LLPS-Meg-0684
ENSMGAG00000003995.1
G1MY19
EZH1
32
LLPS-Meg-0320
ENSMGAG00000013067.1
H9H1W5
FAM83H
33
LLPS-Meg-0847
ENSMGAG00000002478.2
G3UQ73
FANCD2
34
LLPS-Meg-0609
ENSMGAG00000008560.1
G1N8Z2
FANCI
35
LLPS-Meg-2100
ENSMGAG00000003918.1
G1MXR7
FBXL18
36
LLPS-Meg-0811
ENSMGAG00000002004.2
G1MT22
FGFR1
37
LLPS-Meg-1583
ENSMGAG00000007933.1
G1N7D2
FYTTD1
38
LLPS-Meg-1576
ENSMGAG00000014288.2
G1NNA1
GSK3B
39
LLPS-Meg-0124
ENSMGAG00000013552.1
G1NLD8
HIF1A
40
LLPS-Meg-2716
ENSMGAG00000013120.2
G1NKB5
HIPK2
41
LLPS-Meg-0295
ENSMGAG00000010635.1
G1NDW3
HNRNPA2B1
42
LLPS-Meg-0061
ENSMGAG00000015083.2
G1NQB6
HSPH1
43
LLPS-Meg-1978
ENSMGAG00000000980.1
G1MQM0
IVNS1ABP
44
LLPS-Meg-2119
ENSMGAG00000007585.1
G1N6L6
KPNA2
45
LLPS-Meg-3011
ENSMGAG00000011888.2
G1NH50
LOC100549826
46
LLPS-Meg-1924
ENSMGAG00000012006.2
G1NHF4
LOC100550170
47
LLPS-Meg-0633
ENSMGAG00000008869.2
G1MYJ8
NONO
48
LLPS-Meg-0052
ENSMGAG00000008342.2
G1N8B0
NR5A1
49
LLPS-Meg-3296
ENSMGAG00000006240.2
G1N3F3
NSRP1
50
LLPS-Meg-0085
ENSMGAG00000008346.1
G1N8C7
OGG1
51
LLPS-Meg-2602
ENSMGAG00000001311.1
G1MRG5
PLRG1
52
LLPS-Meg-2265
ENSMGAG00000012573.2
G1NIY0
PNN
53
LLPS-Meg-3039
ENSMGAG00000010373.2
G1ND77
PPIG
54
LLPS-Meg-0691
ENSMGAG00000003180.2
G1MW12
PRPF19
55
LLPS-Meg-0359
ENSMGAG00000004769.2
G1N031
PRPF8
56
LLPS-Meg-2906
ENSMGAG00000013617.2
G1NLJ2
PSMA3
57
LLPS-Meg-0529
ENSMGAG00000015134.1
G1NQG1
PSPC1
58
LLPS-Meg-0526
ENSMGAG00000003503.2
G1MX22
PTBP1
59
LLPS-Meg-1366
ENSMGAG00000005844.2
G1N2I3
RAPGEF1
60
LLPS-Meg-1870
ENSMGAG00000003981.2
G1MXX8
RBM17
61
LLPS-Meg-2364
ENSMGAG00000001801.2
G1MSK0
RBMX2
62
LLPS-Meg-1452
ENSMGAG00000010042.1
G1NCC9
RNPS1
63
LLPS-Meg-1200
ENSMGAG00000001807.2
G1MSL9
SARNP
64
LLPS-Meg-1267
ENSMGAG00000001330.2
H9H083
SF3A1
65
LLPS-Meg-1842
ENSMGAG00000001950.2
G1MSY8
SF3A2
66
LLPS-Meg-0499
ENSMGAG00000002875.2
G3UUC6
SF3A3
67
LLPS-Meg-1816
ENSMGAG00000004237.2
G1MYK0
SFPQ
68
LLPS-Meg-2242
ENSMGAG00000009879.2
G3URX7
SMAD3
69
LLPS-Meg-1974
ENSMGAG00000001831.2
G1MSU1
SNRNP200
70
LLPS-Meg-0122
ENSMGAG00000003241.2
G1MW34
SNRNP35
71
LLPS-Meg-0578
ENSMGAG00000009427.1
G1NAY3
SNRPA1
72
LLPS-Meg-0898
ENSMGAG00000002099.2
G1MTD7
SPOP
73
LLPS-Meg-0815
ENSMGAG00000012072.2
G1NHM4
SRSF11
74
LLPS-Meg-1748
ENSMGAG00000002503.1
G1MUB1
SRSF3
75
LLPS-Meg-0573
ENSMGAG00000002400.2
G1MU39
SRSF4
76
LLPS-Meg-1750
ENSMGAG00000007415.2
G1N681
SRSF7
77
LLPS-Meg-1678
ENSMGAG00000003545.2
G1MWW8
STAT3
78
LLPS-Meg-0350
ENSMGAG00000008144.2
G1N7V8
SUMO1
79
LLPS-Meg-1469
ENSMGAG00000002050.1
G1MT75
TGFBR1
80
LLPS-Meg-0885
ENSMGAG00000002853.2
G1MV83
TRA2B
81
LLPS-Meg-0988
ENSMGAG00000009680.2
G5E7V4
TTC14
82
LLPS-Meg-1810
ENSMGAG00000006549.2
G1N472
U2SURP
83
LLPS-Meg-2373
ENSMGAG00000010391.2
G1NDA3
YTHDC1
84
LLPS-Meg-2237
ENSMGAG00000001270.2
G1MRB2
ZC3H11A
85
LLPS-Meg-2376
ENSMGAG00000011512.1
G1NG69
ZNF106
86
LLPS-Meg-2816
ENSMGAG00000003601.2
G1MX00
ZNF131