Melampsora laricipopulina      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 33 genes.  Reviewed (0 or Unreviewed (33

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Mel-0618
MELLADRAFT_114885
F4R418
MELLADRAFT_114885
2
LLPS-Mel-0961
MELLADRAFT_118604
F4SB63
MELLADRAFT_118604
3
LLPS-Mel-0487
MELLADRAFT_27095
F4RX95
MELLADRAFT_27095
4
LLPS-Mel-1207
MELLADRAFT_29239
F4RD08
MELLADRAFT_29239
5
LLPS-Mel-0813
MELLADRAFT_32688
F4R5C8
MELLADRAFT_32688
6
LLPS-Mel-0332
MELLADRAFT_33382
F4R917
MELLADRAFT_33382
7
LLPS-Mel-0301
MELLADRAFT_33857
F4RC30
MELLADRAFT_33857
8
LLPS-Mel-0531
MELLADRAFT_35320
F4RIQ6
MELLADRAFT_35320
9
LLPS-Mel-0075
MELLADRAFT_35537
F4RJC8
MELLADRAFT_35537
10
LLPS-Mel-0763
MELLADRAFT_35888
F4RL89
MELLADRAFT_35888
11
LLPS-Mel-1206
MELLADRAFT_40307
F4S7H9
MELLADRAFT_40307
12
LLPS-Mel-1182
MELLADRAFT_41199
F4SCH3
MELLADRAFT_41199
13
LLPS-Mel-0350
MELLADRAFT_41759
F4R5G1
MELLADRAFT_41759
14
LLPS-Mel-0161
MELLADRAFT_42168
F4RAU1
MELLADRAFT_42168
15
LLPS-Mel-0881
MELLADRAFT_42536
F4RD78
MELLADRAFT_42536
16
LLPS-Mel-0496
MELLADRAFT_42773
F4RFQ1
MELLADRAFT_42773
17
LLPS-Mel-1057
MELLADRAFT_42961
F4RHB4
MELLADRAFT_42961
18
LLPS-Mel-0449
MELLADRAFT_43078
F4RIL1
MELLADRAFT_43078
19
LLPS-Mel-0437
MELLADRAFT_43362
F4RKU7
MELLADRAFT_43362
20
LLPS-Mel-1089
MELLADRAFT_45811
F4S8C9
MELLADRAFT_45811
21
LLPS-Mel-0269
MELLADRAFT_48549
F4RNE5
MELLADRAFT_48549
22
LLPS-Mel-1068
MELLADRAFT_49123
F4RSV8
MELLADRAFT_49123
23
LLPS-Mel-0752
MELLADRAFT_50494
F4S5B0
MELLADRAFT_50494
24
LLPS-Mel-1249
MELLADRAFT_52499
F4RLF4
MELLADRAFT_52499
25
LLPS-Mel-0633
MELLADRAFT_69496
F4SAY7
MELLADRAFT_69496
26
LLPS-Mel-0304
MELLADRAFT_71269
F4REB6
MELLADRAFT_71269
27
LLPS-Mel-0071
MELLADRAFT_72009
F4RNM0
MELLADRAFT_72009
28
LLPS-Mel-0090
MELLADRAFT_74358
F4RD76
MELLADRAFT_74358
29
LLPS-Mel-0782
MELLADRAFT_77115
F4RDG3
MELLADRAFT_77115
30
LLPS-Mel-0108
MELLADRAFT_79059
F4S280
MELLADRAFT_79059
31
LLPS-Mel-1134
MELLADRAFT_85661
F4RJC3
MELLADRAFT_85661
32
LLPS-Mel-0278
MELLADRAFT_92446
F4R9P5
MELLADRAFT_92446
33
LLPS-Mel-1095
MELLADRAFT_93106
F4S3Y9
MELLADRAFT_93106