Magnaporthe oryzae      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 33 genes.  Reviewed (0 or Unreviewed (33

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Mao-1073
MGG_01426
Q52G60
CEF1
2
LLPS-Mao-0512
MGG_00347
G4NCQ8
MGG_00347
3
LLPS-Mao-0895
MGG_00348
G4NCQ7
MGG_00348
4
LLPS-Mao-0814
MGG_00356
G4NCP7
MGG_00356
5
LLPS-Mao-0184
MGG_02526
G4MKD3
MGG_02526
6
LLPS-Mao-1224
MGG_02580
G4NJU7
MGG_02580
7
LLPS-Mao-0883
MGG_02656
G4NJG7
MGG_02656
8
LLPS-Mao-1074
MGG_02946
G4NLD4
MGG_02946
9
LLPS-Mao-0394
MGG_03086
G4NKC1
MGG_03086
10
LLPS-Mao-1158
MGG_03116
G4N5Z2
MGG_03116
11
LLPS-Mao-1449
MGG_03758
G4NHQ3
MGG_03758
12
LLPS-Mao-1201
MGG_04351
G4MYZ3
MGG_04351
13
LLPS-Mao-1442
MGG_04399
G4MKM1
MGG_04399
14
LLPS-Mao-1109
MGG_04430
G4MZG2
MGG_04430
15
LLPS-Mao-1532
MGG_04513
G4MSE1
MGG_04513
16
LLPS-Mao-0034
MGG_04663
G4MTA5
MGG_04663
17
LLPS-Mao-1071
MGG_04717
G4MQX5
MGG_04717
18
LLPS-Mao-0052
MGG_05244
G4N5D4
MGG_05244
19
LLPS-Mao-0276
MGG_05375
G4MKX4
MGG_05375
20
LLPS-Mao-0498
MGG_05616
G4MNI3
MGG_05616
21
LLPS-Mao-0350
MGG_06188
G4N027
MGG_06188
22
LLPS-Mao-1326
MGG_06365
G4N7T6
MGG_06365
23
LLPS-Mao-0424
MGG_06748
G4MLL7
MGG_06748
24
LLPS-Mao-0558
MGG_06928
G4MNE1
MGG_06928
25
LLPS-Mao-1319
MGG_07252
G4MUH3
MGG_07252
26
LLPS-Mao-1259
MGG_07511
G4N1P5
MGG_07511
27
LLPS-Mao-1358
MGG_07727
G4N0J5
MGG_07727
28
LLPS-Mao-0595
MGG_11457
G4ND29
MGG_11457
29
LLPS-Mao-0509
MGG_12972
G4N2Q7
MGG_12972
30
LLPS-Mao-0050
MGG_13209
G4N5H1
MGG_13209
31
LLPS-Mao-0537
MGG_13401
G4N1L4
MGG_13401
32
LLPS-Mao-0022
MGG_15536
G4MZE4
MGG_15536
33
LLPS-Mao-0703
MGG_15607
G4MVM0
MGG_15607