Loxodonta africana      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 114 genes.  Reviewed (0 or Unreviewed (114

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Loa-0075
ENSLAFG00000022855.2
G3TP58
2
LLPS-Loa-0466
ENSLAFG00000018056.4
G3TK21
3
LLPS-Loa-0607
ENSLAFG00000010344.4
G3T5F5
4
LLPS-Loa-0692
ENSLAFG00000029587.1
G3TVP3
5
LLPS-Loa-2125
ENSLAFG00000028496.1
G3TV31
6
LLPS-Loa-3114
ENSLAFG00000031227.1
G3U4E0
7
LLPS-Loa-0458
ENSLAFG00000012905.4
G3TAB5
AGO2
8
LLPS-Loa-4199
ENSLAFG00000029382.1
G3U291
AKAP17A
9
LLPS-Loa-1260
ENSLAFG00000003083.3
G3UA20
ALYREF
10
LLPS-Loa-1083
ENSLAFG00000003884.3
G3ST95
ANXA10
11
LLPS-Loa-2419
ENSLAFG00000011404.2
G3T7E7
ANXA2
12
LLPS-Loa-1971
ENSLAFG00000005314.3
G3UEC1
ARL6IP4
13
LLPS-Loa-1553
ENSLAFG00000015442.4
G3TF68
ATR
14
LLPS-Loa-1872
ENSLAFG00000003183.2
G3SRV3
BCAS2
15
LLPS-Loa-2592
ENSLAFG00000009762.3
G3T4B2
C9orf78
16
LLPS-Loa-1584
ENSLAFG00000004431.3
G3SU92
CARM1
17
LLPS-Loa-1381
ENSLAFG00000000606.4
G3SM19
CASC3
18
LLPS-Loa-1469
ENSLAFG00000007715.3
G3T0I3
CCNL1
19
LLPS-Loa-0019
ENSLAFG00000012689.3
G3T9W5
CDC5L
20
LLPS-Loa-1302
ENSLAFG00000028354.1
G3UC20
CDK1
21
LLPS-Loa-3518
ENSLAFG00000012072.3
G3T8Q9
CDK7
22
LLPS-Loa-2356
ENSLAFG00000016847.3
G3THQ7
CDK9
23
LLPS-Loa-2284
ENSLAFG00000009417.4
G3T3P7
CDKL5
24
LLPS-Loa-0782
ENSLAFG00000006150.3
G3SXM1
COP1
25
LLPS-Loa-2119
ENSLAFG00000002394.4
G3SQD7
CSNK1A1
26
LLPS-Loa-1420
ENSLAFG00000015844.4
G5E706
CTNNBL1
27
LLPS-Loa-1114
ENSLAFG00000010465.4
G3T5N6
DDX46
28
LLPS-Loa-3333
ENSLAFG00000013724.3
G3TBV1
DGCR8
29
LLPS-Loa-0179
ENSLAFG00000003603.2
G3SSQ7
DNAJB1
30
LLPS-Loa-1316
ENSLAFG00000014731.3
G3TDR3
DNAJC17
31
LLPS-Loa-3579
ENSLAFG00000004569.3
G3SUH6
DYRK3
32
LLPS-Loa-4317
ENSLAFG00000013803.3
G3TC14
EGF
33
LLPS-Loa-2327
ENSLAFG00000003248.3
G3SS04
ERH
34
LLPS-Loa-0470
ENSLAFG00000010425.4
G3T5L6
EZH1
35
LLPS-Loa-0579
ENSLAFG00000014029.3
G3TWT3
FAM76B
36
LLPS-Loa-4111
ENSLAFG00000029225.1
G3U0R1
FAM83H
37
LLPS-Loa-1292
ENSLAFG00000011645.3
G3T7X0
FANCD2
38
LLPS-Loa-4403
ENSLAFG00000016287.4
G3TGQ9
FANCI
39
LLPS-Loa-3355
ENSLAFG00000001983.3
G3SPL1
FBXL18
40
LLPS-Loa-2316
ENSLAFG00000018249.4
G3TKE5
FGFR1
41
LLPS-Loa-2649
ENSLAFG00000029920.1
G3U263
FRMD8
42
LLPS-Loa-0829
ENSLAFG00000001643.2
G3SNY8
FUS
43
LLPS-Loa-3628
ENSLAFG00000017209.3
G3TIF3
FYTTD1
44
LLPS-Loa-3954
ENSLAFG00000008944.3
G3T2T8
GLI3
45
LLPS-Loa-2564
ENSLAFG00000007833.3
G3T0Q7
GSK3B
46
LLPS-Loa-0279
ENSLAFG00000013410.4
G3TB90
HIF1A
47
LLPS-Loa-1640
ENSLAFG00000017230.2
G3TIG6
HIF3A
48
LLPS-Loa-3105
ENSLAFG00000006963.4
G3U4C6
HIPK2
49
LLPS-Loa-0188
ENSLAFG00000006902.3
G3U7V6
HNRNPA2B1
50
LLPS-Loa-1135
ENSLAFG00000026567.1
G3U2B1
HNRNPK
51
LLPS-Loa-2263
ENSLAFG00000015956.3
G3ULX7
HSPH1
52
LLPS-Loa-1976
ENSLAFG00000028218.1
G3UDF7
ILF2
53
LLPS-Loa-1483
ENSLAFG00000021667.2
G3TQG7
ILF3
54
LLPS-Loa-4063
ENSLAFG00000008301.3
G3T1J4
IVNS1ABP
55
LLPS-Loa-0879
ENSLAFG00000022875.2
G3TP33
KPNA2
56
LLPS-Loa-0048
ENSLAFG00000013986.3
G3TCD4
LOC100664118
57
LLPS-Loa-2548
ENSLAFG00000015833.3
G3U2R4
LUC7L
58
LLPS-Loa-4602
ENSLAFG00000012745.2
G3TA02
NAGK
59
LLPS-Loa-1487
ENSLAFG00000013422.2
G3TB96
NONO
60
LLPS-Loa-0537
ENSLAFG00000017025.2
G3TI24
NOSIP
61
LLPS-Loa-0200
ENSLAFG00000018557.3
G3TL19
NR5A1
62
LLPS-Loa-3993
ENSLAFG00000013731.4
G3TBV7
NSRP1
63
LLPS-Loa-1214
ENSLAFG00000014334.2
G3UFX2
NUAK2
64
LLPS-Loa-2458
ENSLAFG00000006778.3
G3SYU6
NXF1
65
LLPS-Loa-1262
ENSLAFG00000016438.3
G3TH06
OGG1
66
LLPS-Loa-0639
ENSLAFG00000003890.3
G3TP25
P2RY12
67
LLPS-Loa-2800
ENSLAFG00000017372.4
G3TIS6
PLRG1
68
LLPS-Loa-3288
ENSLAFG00000008837.2
G3T2M3
PNN
69
LLPS-Loa-0317
ENSLAFG00000008181.3
G3T1D0
PPIG
70
LLPS-Loa-3284
ENSLAFG00000002644.3
G3SQV9
PRPF19
71
LLPS-Loa-0023
ENSLAFG00000015445.3
G3TF66
PRPF8
72
LLPS-Loa-3282
ENSLAFG00000008648.3
G3T287
PSMA3
73
LLPS-Loa-0073
ENSLAFG00000010968.3
G3U6G8
PSPC1
74
LLPS-Loa-1013
ENSLAFG00000027110.1
G3UBJ5
PTBP1
75
LLPS-Loa-2440
ENSLAFG00000003693.4
G3U793
RAPGEF1
76
LLPS-Loa-3370
ENSLAFG00000011629.3
G3T7V5
RBM17
77
LLPS-Loa-1479
ENSLAFG00000018567.3
G3TL24
RBM23
78
LLPS-Loa-1902
ENSLAFG00000017625.4
G3TJ87
RBMX2
79
LLPS-Loa-2164
ENSLAFG00000030860.1
G3TW74
RNF151
80
LLPS-Loa-2573
ENSLAFG00000000728.4
G3SM97
RNPS1
81
LLPS-Loa-2105
ENSLAFG00000015053.3
G3TEE0
SARNP
82
LLPS-Loa-0791
ENSLAFG00000007201.3
G3SZK7
SF1
83
LLPS-Loa-1026
ENSLAFG00000000448.3
G3SLR5
SF3A1
84
LLPS-Loa-3366
ENSLAFG00000021350.2
G3TQ45
SF3A2
85
LLPS-Loa-1533
ENSLAFG00000008094.3
G3UHV6
SF3A3
86
LLPS-Loa-3692
ENSLAFG00000001956.3
G3SPJ8
SF3B1
87
LLPS-Loa-1282
ENSLAFG00000015951.3
G3TG13
SFPQ
88
LLPS-Loa-1993
ENSLAFG00000015626.3
G3TFK2
SNRNP200
89
LLPS-Loa-0710
ENSLAFG00000022302.2
G3TMN9
SNRNP35
90
LLPS-Loa-2962
ENSLAFG00000028536.1
G3ULP2
SNRNP70
91
LLPS-Loa-1312
ENSLAFG00000026568.1
G3TX12
SNRPA
92
LLPS-Loa-0360
ENSLAFG00000012638.3
G3U304
SNRPA1
93
LLPS-Loa-1568
ENSLAFG00000008775.2
G3T2H5
SNRPB2
94
LLPS-Loa-3905
ENSLAFG00000016307.3
G3TGR8
SON
95
LLPS-Loa-3675
ENSLAFG00000003311.3
G3SS50
SPOP
96
LLPS-Loa-1379
ENSLAFG00000000624.3
G3SM30
SRRM2
97
LLPS-Loa-0076
ENSLAFG00000026905.1
G3U7V4
SRSF10
98
LLPS-Loa-0038
ENSLAFG00000015882.3
G3TFW8
SRSF11
99
LLPS-Loa-1660
ENSLAFG00000007469.2
G3T024
SRSF2
100
LLPS-Loa-0282
ENSLAFG00000018193.3
G3TKA5
SRSF3
101
LLPS-Loa-2251
ENSLAFG00000002575.3
G3UE64
SRSF4
102
LLPS-Loa-0464
ENSLAFG00000005260.2
G3SVW0
SRSF5
103
LLPS-Loa-2941
ENSLAFG00000005666.3
G3UGY5
SRSF7
104
LLPS-Loa-0314
ENSLAFG00000014062.4
G3UDC6
STAT3
105
LLPS-Loa-3604
ENSLAFG00000003214.3
G3SRY2
TAP1
106
LLPS-Loa-3439
ENSLAFG00000008572.3
G3U5X5
TGFBR1
107
LLPS-Loa-1864
ENSLAFG00000017165.3
G3UFI5
TRA2B
108
LLPS-Loa-3819
ENSLAFG00000013418.3
G3TB97
TTC14
109
LLPS-Loa-0507
ENSLAFG00000002566.3
G3SQQ6
U2SURP
110
LLPS-Loa-2635
ENSLAFG00000014553.4
G3TTN6
XPO1
111
LLPS-Loa-0260
ENSLAFG00000021592.2
G3TQR4
YTHDC1
112
LLPS-Loa-2714
ENSLAFG00000002215.3
G3SQ17
ZNF106
113
LLPS-Loa-3011
ENSLAFG00000004927.4
G3SV73
ZNF131
114
LLPS-Loa-2579
ENSLAFG00000013608.2
G3TBM6
ZNF688