Ictidomys tridecemlineatus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 117 genes.  Reviewed (0 or Unreviewed (117

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Ict-0993
ENSSTOG00000023350.2
I3N033
2
LLPS-Ict-1731
ENSSTOG00000029337.1
A0A287DDX4
3
LLPS-Ict-2240
ENSSTOG00000013988.3
I3MM30
4
LLPS-Ict-4579
ENSSTOG00000016570.3
I3N007
5
LLPS-Ict-1492
ENSSTOG00000008113.3
I3MB33
AGO2
6
LLPS-Ict-0267
ENSSTOG00000021816.2
I3N6R2
AKAP17A
7
LLPS-Ict-2361
ENSSTOG00000009507.3
I3MDP9
ANXA10
8
LLPS-Ict-0542
ENSSTOG00000023376.2
I3N720
Anxa2
9
LLPS-Ict-3284
ENSSTOG00000010405.3
I3MFE9
Arl6ip4
10
LLPS-Ict-1520
ENSSTOG00000021792.2
I3MUH2
ATR
11
LLPS-Ict-0120
ENSSTOG00000014760.3
I3MNI4
BCAS2
12
LLPS-Ict-0342
ENSSTOG00000029847.1
I3MWD9
BCL2L2-PABPN1
13
LLPS-Ict-2891
ENSSTOG00000007864.3
A0A287CZW9
CARM1
14
LLPS-Ict-4080
ENSSTOG00000006374.3
I3M7T7
CASC3
15
LLPS-Ict-3317
ENSSTOG00000011805.3
I3MI04
CCNL1
16
LLPS-Ict-1851
ENSSTOG00000016173.3
I3MR18
CDC5L
17
LLPS-Ict-1784
ENSSTOG00000012275.3
A0A287D2U8
CDK1
18
LLPS-Ict-0151
ENSSTOG00000028682.2
I3MYX5
CDK7
19
LLPS-Ict-3639
ENSSTOG00000008280.3
I3MBB8
CDK9
20
LLPS-Ict-4532
ENSSTOG00000014545.3
I3MN56
CDKL5
21
LLPS-Ict-0312
ENSSTOG00000008974.3
I3MCN8
CLK2
22
LLPS-Ict-2460
ENSSTOG00000008436.3
I3MBN5
COP1
23
LLPS-Ict-2970
ENSSTOG00000022141.2
A0A287DAP7
CSNK1A1
24
LLPS-Ict-3788
ENSSTOG00000000179.3
I3LW40
CTNNBL1
25
LLPS-Ict-3938
ENSSTOG00000020630.2
I3N358
CUNH9orf78
26
LLPS-Ict-0534
ENSSTOG00000012838.3
I3MJW2
DDX39B
27
LLPS-Ict-0244
ENSSTOG00000025564.2
I3NB31
DDX46
28
LLPS-Ict-2509
ENSSTOG00000023936.2
I3NHF5
DGCR8
29
LLPS-Ict-2251
ENSSTOG00000026438.2
I3MX06
DNAJB1
30
LLPS-Ict-1277
ENSSTOG00000000355.3
I3LWG4
DNAJC17
31
LLPS-Ict-4274
ENSSTOG00000006353.3
I3M7Q9
DYRK3
32
LLPS-Ict-0826
ENSSTOG00000025325.2
I3NBZ6
ERH
33
LLPS-Ict-1765
ENSSTOG00000003776.3
I3M2Z1
EZH1
34
LLPS-Ict-3039
ENSSTOG00000023725.2
I3N3D1
FAM76B
35
LLPS-Ict-1041
ENSSTOG00000020789.2
I3MTC0
FAM83H
36
LLPS-Ict-3554
ENSSTOG00000013919.3
I3MLZ1
FANCD2
37
LLPS-Ict-2622
ENSSTOG00000006814.3
I3M8M4
FANCI
38
LLPS-Ict-3879
ENSSTOG00000028236.2
I3N600
FBXL18
39
LLPS-Ict-3491
ENSSTOG00000001175.3
A0A287D0Q7
FGFR1
40
LLPS-Ict-2096
ENSSTOG00000003760.3
I3M2W7
FRMD8
41
LLPS-Ict-1336
ENSSTOG00000028291.2
A0A287DBV5
FYTTD1
42
LLPS-Ict-4400
ENSSTOG00000020844.2
I3NFN9
GLI3
43
LLPS-Ict-0530
ENSSTOG00000014997.3
I3NFP6
GSK3B
44
LLPS-Ict-0422
ENSSTOG00000004833.3
I3M4Y9
Hif1a
45
LLPS-Ict-2195
ENSSTOG00000011980.3
I3MT38
HIF3A
46
LLPS-Ict-1050
ENSSTOG00000005957.3
I3M711
HIPK2
47
LLPS-Ict-0751
ENSSTOG00000006551.3
I3M849
Hnrnpa1
48
LLPS-Ict-1119
ENSSTOG00000006202.3
A0A287D861
Hnrnpa2b1
49
LLPS-Ict-0235
ENSSTOG00000014107.3
A0A287CYM1
HNRNPK
50
LLPS-Ict-3661
ENSSTOG00000019787.2
I3ND33
HSPA6
51
LLPS-Ict-2053
ENSSTOG00000001700.3
A0A287CZC8
HSPH1
52
LLPS-Ict-2392
ENSSTOG00000000667.3
I3LX45
ILF2
53
LLPS-Ict-1122
ENSSTOG00000007786.3
A0A287D036
ILF3
54
LLPS-Ict-1086
ENSSTOG00000010371.3
A0A287DFD6
IVNS1ABP
55
LLPS-Ict-2293
ENSSTOG00000026152.2
I3NFF1
Kpna2
56
LLPS-Ict-2224
ENSSTOG00000014706.3
I3MNE9
LOC101966736
57
LLPS-Ict-3951
ENSSTOG00000010653.3
I3MFX0
LUC7L
58
LLPS-Ict-3252
ENSSTOG00000003976.3
I3M3C7
NAGK
59
LLPS-Ict-0708
ENSSTOG00000001134.3
I3LY16
NKAP
60
LLPS-Ict-1823
ENSSTOG00000015869.3
I3MQH7
NONO
61
LLPS-Ict-0731
ENSSTOG00000014638.3
I3MNA8
NOSIP
62
LLPS-Ict-2913
ENSSTOG00000000396.3
I3LWJ5
NR5A1
63
LLPS-Ict-1656
ENSSTOG00000028001.2
I3N0M3
NSRP1
64
LLPS-Ict-2746
ENSSTOG00000026121.2
I3N4W3
NUAK2
65
LLPS-Ict-1417
ENSSTOG00000004463.3
A0A287D2K3
NXF1
66
LLPS-Ict-3012
ENSSTOG00000002087.3
I3LZR6
OGG1
67
LLPS-Ict-0869
ENSSTOG00000010530.3
I3MFN5
P2RY12
68
LLPS-Ict-1634
ENSSTOG00000026002.2
A0A287CZR4
PCBP1
69
LLPS-Ict-1927
ENSSTOG00000010145.3
I3MEX2
PLRG1
70
LLPS-Ict-1661
ENSSTOG00000002911.3
I3M1B9
Pnn
71
LLPS-Ict-0361
ENSSTOG00000011656.3
I3MHR7
PPIG
72
LLPS-Ict-1986
ENSSTOG00000001598.3
A0A287DCX1
PRPF19
73
LLPS-Ict-1259
ENSSTOG00000005128.3
I3M5L4
PRPF8
74
LLPS-Ict-4659
ENSSTOG00000013539.3
I3ML71
PSMA3
75
LLPS-Ict-3394
ENSSTOG00000026833.2
A0A287D9P7
PSPC1
76
LLPS-Ict-0226
ENSSTOG00000026904.2
A0A287CZP5
PTBP1
77
LLPS-Ict-2025
ENSSTOG00000002466.3
A0A287DG88
RAPGEF1
78
LLPS-Ict-2662
ENSSTOG00000013591.3
I3MLA5
RBM17
79
LLPS-Ict-3263
ENSSTOG00000010354.3
I3MFC8
RBM23
80
LLPS-Ict-3451
ENSSTOG00000015391.3
I3MPN5
RBMX2
81
LLPS-Ict-3181
ENSSTOG00000013200.3
I3MKJ8
RNPS1
82
LLPS-Ict-2984
ENSSTOG00000000283.3
I3LWA8
SARNP
83
LLPS-Ict-0104
ENSSTOG00000009790.3
I3ME85
Sf1
84
LLPS-Ict-0230
ENSSTOG00000013892.3
I3MLW4
SF3A1
85
LLPS-Ict-0167
ENSSTOG00000007495.3
I3M9U6
SF3A2
86
LLPS-Ict-2226
ENSSTOG00000001691.3
I3LZ25
SF3A3
87
LLPS-Ict-1004
ENSSTOG00000011034.3
A0A287DEJ0
SF3B1
88
LLPS-Ict-2001
ENSSTOG00000014004.3
I3MM42
Sfpq
89
LLPS-Ict-2003
ENSSTOG00000010286.3
I3MF72
SMAD3
90
LLPS-Ict-0763
ENSSTOG00000016351.3
I3MRE8
SNRNP200
91
LLPS-Ict-2975
ENSSTOG00000025145.2
I3NGR9
SNRNP35
92
LLPS-Ict-0999
ENSSTOG00000021474.2
I3MZD6
SNRPA
93
LLPS-Ict-0270
ENSSTOG00000009055.3
I3MCU8
SNRPA1
94
LLPS-Ict-3450
ENSSTOG00000009198.3
I3MD45
Snrpb2
95
LLPS-Ict-1108
ENSSTOG00000007851.3
I3MAJ6
SPOP
96
LLPS-Ict-2576
ENSSTOG00000025810.2
I3N7L0
SRRM2
97
LLPS-Ict-1365
ENSSTOG00000000243.3
A0A287DCN5
Srsf1
98
LLPS-Ict-3490
ENSSTOG00000000956.3
I3LXN2
SRSF10
99
LLPS-Ict-3113
ENSSTOG00000008675.3
A0A287CSA4
SRSF11
100
LLPS-Ict-1856
ENSSTOG00000025265.2
I3NGJ8
Srsf2
101
LLPS-Ict-3112
ENSSTOG00000014280.3
I3N1N9
Srsf3
102
LLPS-Ict-2732
ENSSTOG00000015908.3
I3MQK2
SRSF4
103
LLPS-Ict-1117
ENSSTOG00000004389.3
I3M452
SRSF7
104
LLPS-Ict-1132
ENSSTOG00000007344.3
A0A287CRW6
SRSF9
105
LLPS-Ict-0585
ENSSTOG00000006741.3
I3M8H8
STAT3
106
LLPS-Ict-0805
ENSSTOG00000025405.2
A0A287D1D9
Sumo1
107
LLPS-Ict-4310
ENSSTOG00000003451.3
I3M2B3
TAP1
108
LLPS-Ict-1979
ENSSTOG00000013570.3
I3ML93
TGFBR1
109
LLPS-Ict-0892
ENSSTOG00000006720.3
I3M8E8
TRA2B
110
LLPS-Ict-2577
ENSSTOG00000003827.3
I3M329
TTC14
111
LLPS-Ict-3598
ENSSTOG00000019595.2
I3N1B3
U2AF2
112
LLPS-Ict-3998
ENSSTOG00000015997.3
I3MQR0
U2SURP
113
LLPS-Ict-0547
ENSSTOG00000016122.3
A0A287CSQ9
XPO1
114
LLPS-Ict-0237
ENSSTOG00000013652.3
I3MLF0
YTHDC1
115
LLPS-Ict-0761
ENSSTOG00000000736.3
I3LX98
ZC3H11A
116
LLPS-Ict-4227
ENSSTOG00000015383.3
I3MPM9
Znf131
117
LLPS-Ict-1649
ENSSTOG00000013283.3
I3MKP7
ZNF688