Hordeum vulgare      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 51 genes.  Reviewed (0 or Unreviewed (51

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Hov-0004
HORVU4Hr1G058600
A0A287P7M2
2
LLPS-Hov-0037
HORVU4Hr1G060270
A0A287PA58
3
LLPS-Hov-0039
HORVU3Hr1G064550
A0A287LD31
4
LLPS-Hov-0125
HORVU3Hr1G037080
A0A287KSF1
5
LLPS-Hov-0168
HORVU5Hr1G058160
A0A287RD62
6
LLPS-Hov-0176
HORVU2Hr1G059140
A0A287I3X0
7
LLPS-Hov-0366
HORVU2Hr1G029640
A0A287HJ95
8
LLPS-Hov-0367
HORVU4Hr1G006320
A0A287N258
9
LLPS-Hov-0383
HORVU6Hr1G004350
A0A287T6T1
10
LLPS-Hov-0403
HORVU7Hr1G026840
A0A287VSN2
11
LLPS-Hov-0432
HORVU6Hr1G056200
F2EC62
12
LLPS-Hov-0434
HORVU2Hr1G023850
A0A287HDU6
13
LLPS-Hov-0437
HORVU0Hr1G001180
M0X5Y1
14
LLPS-Hov-0449
HORVU3Hr1G063220
A0A287LB73
15
LLPS-Hov-0533
HORVU5Hr1G049430
A0A287R566
16
LLPS-Hov-0547
HORVU3Hr1G110920
A0A287MPK9
17
LLPS-Hov-0567
HORVU5Hr1G115170
A0A287SU61
18
LLPS-Hov-0568
HORVU4Hr1G045510
A0A287NWV5
19
LLPS-Hov-0596
HORVU3Hr1G051340
A0A287L1B8
20
LLPS-Hov-0648
HORVU4Hr1G048140
A0A287NY72
21
LLPS-Hov-0695
HORVU3Hr1G035450
A0A287KRB1
22
LLPS-Hov-0702
HORVU1Hr1G062980
F2CU35
23
LLPS-Hov-0740
HORVU0Hr1G020490
A0A287E626
24
LLPS-Hov-0781
HORVU7Hr1G031320
A0A287VXS9
25
LLPS-Hov-0794
HORVU2Hr1G076810
A0A287IIE6
26
LLPS-Hov-0797
HORVU7Hr1G116590
M0VDI0
27
LLPS-Hov-0863
HORVU5Hr1G068130
A0A287RMI9
28
LLPS-Hov-0879
HORVU7Hr1G118750
A0A287XZ78
29
LLPS-Hov-0930
HORVU4Hr1G038850
A0A287NU88
30
LLPS-Hov-0936
HORVU1Hr1G039050
A0A287F7D4
31
LLPS-Hov-0978
HORVU5Hr1G122640
F2CVG7
32
LLPS-Hov-1128
HORVU7Hr1G118650
A0A287XYX6
33
LLPS-Hov-1138
HORVU3Hr1G015610
M0XDE9
34
LLPS-Hov-1141
HORVU1Hr1G022420
F2DE93
35
LLPS-Hov-1145
HORVU5Hr1G124770
A0A287T290
36
LLPS-Hov-1173
HORVU6Hr1G029290
A0A287TR91
37
LLPS-Hov-1299
HORVU2Hr1G069490
A0A287IBW7
38
LLPS-Hov-1303
HORVU6Hr1G077700
A0A287UST8
39
LLPS-Hov-1308
HORVU6Hr1G020850
F2D0I0
40
LLPS-Hov-1332
HORVU3Hr1G013740
A0A287K5K0
41
LLPS-Hov-1445
HORVU7Hr1G010620
A0A287VHW3
42
LLPS-Hov-1621
HORVU4Hr1G055040
F2DLQ1
43
LLPS-Hov-1635
HORVU4Hr1G061270
A0A287PA72
44
LLPS-Hov-1646
HORVU1Hr1G046870
M0XWD1
45
LLPS-Hov-1682
HORVU2Hr1G056230
F2CW43
46
LLPS-Hov-1714
HORVU7Hr1G073870
A0A287WW47
47
LLPS-Hov-1826
HORVU6Hr1G093090
F2DRT5
48
LLPS-Hov-2015
HORVU1Hr1G030660
A0A287F1U7
49
LLPS-Hov-2024
HORVU5Hr1G108630
A0A287SNJ3
50
LLPS-Hov-2032
HORVU3Hr1G034440
A0A287KQG7
51
LLPS-Hov-2158
HORVU1Hr1G026280
A0A287EZA7