Helianthus annuus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 58 genes.  Reviewed (0 or Unreviewed (58

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Hea-2646
HannXRQ_Chr01g0026571
A0A251VRI0
AFC1
2
LLPS-Hea-0101
HannXRQ_Chr12g0369531
A0A251T3L6
ATBPM3
3
LLPS-Hea-0418
HannXRQ_Chr08g0225461
A0A251U5N8
ATCDC5
4
LLPS-Hea-0541
HannXRQ_Chr17g0538991
A0A251RLK9
ATER
5
LLPS-Hea-0990
HannXRQ_Chr09g0252981
A0A251TUD2
ATO
6
LLPS-Hea-0161
HannXRQ_Chr03g0080961
A0A251V8G7
ATPRMT4A
7
LLPS-Hea-1586
HannXRQ_Chr05g0141851
A0A251UPB5
ATRAD3
8
LLPS-Hea-0709
HannXRQ_Chr07g0198881
A0A251UCZ2
ATSK13
9
LLPS-Hea-0995
HannXRQ_Chr07g0204231
A0A251UEH8
CDKB2:2
10
LLPS-Hea-0735
HannXRQ_Chr15g0464491
A0A251S565
CDKD1
11
LLPS-Hea-2354
HannXRQ_Chr09g0263611
A0A251TX57
CLF
12
LLPS-Hea-0710
HannXRQ_Chr10g0306131
A0A251TM03
COP1
13
LLPS-Hea-1487
HannXRQ_Chr01g0003371
A0A251VLN7
DRT111
14
LLPS-Hea-2361
HannXRQ_Chr01g0002971
A0A251VK85
HannXRQ_Chr01g0002971
15
LLPS-Hea-2681
HannXRQ_Chr01g0017841
A0A251VPQ7
HannXRQ_Chr01g0017841
16
LLPS-Hea-0441
HannXRQ_Chr02g0058761
A0A251VKM7
HannXRQ_Chr02g0058761
17
LLPS-Hea-2597
HannXRQ_Chr03g0065531
A0A251V5F8
HannXRQ_Chr03g0065531
18
LLPS-Hea-1882
HannXRQ_Chr03g0071621
A0A251V661
HannXRQ_Chr03g0071621
19
LLPS-Hea-1434
HannXRQ_Chr03g0089461
A0A251VAP5
HannXRQ_Chr03g0089461
20
LLPS-Hea-1674
HannXRQ_Chr04g0115031
A0A251UZI0
HannXRQ_Chr04g0115031
21
LLPS-Hea-0573
HannXRQ_Chr04g0120591
A0A251V0Z9
HannXRQ_Chr04g0120591
22
LLPS-Hea-1607
HannXRQ_Chr06g0163811
A0A251UEH6
HannXRQ_Chr06g0163811
23
LLPS-Hea-1279
HannXRQ_Chr06g0174141
A0A251UHY7
HannXRQ_Chr06g0174141
24
LLPS-Hea-1085
HannXRQ_Chr07g0188561
A0A251U9M0
HannXRQ_Chr07g0188561
25
LLPS-Hea-0746
HannXRQ_Chr07g0201281
A0A251UCW9
HannXRQ_Chr07g0201281
26
LLPS-Hea-1777
HannXRQ_Chr08g0223351
A0A251U5Y9
HannXRQ_Chr08g0223351
27
LLPS-Hea-1682
HannXRQ_Chr08g0229511
A0A251U6R9
HannXRQ_Chr08g0229511
28
LLPS-Hea-0596
HannXRQ_Chr08g0237471
A0A251UBT1
HannXRQ_Chr08g0237471
29
LLPS-Hea-1202
HannXRQ_Chr09g0250731
A0A251TUY6
HannXRQ_Chr09g0250731
30
LLPS-Hea-0862
HannXRQ_Chr09g0259771
A0A251TX74
HannXRQ_Chr09g0259771
31
LLPS-Hea-0888
HannXRQ_Chr10g0281901
A0A251TH74
HannXRQ_Chr10g0281901
32
LLPS-Hea-1750
HannXRQ_Chr10g0298091
A0A251TL92
HannXRQ_Chr10g0298091
33
LLPS-Hea-0582
HannXRQ_Chr10g0299291
A0A251TLK1
HannXRQ_Chr10g0299291
34
LLPS-Hea-2490
HannXRQ_Chr10g0314771
A0A251TQR5
HannXRQ_Chr10g0314771
35
LLPS-Hea-0867
HannXRQ_Chr11g0338681
A0A251TBN1
HannXRQ_Chr11g0338681
36
LLPS-Hea-0013
HannXRQ_Chr12g0359441
A0A251T0Z9
HannXRQ_Chr12g0359441
37
LLPS-Hea-0398
HannXRQ_Chr13g0402661
A0A251SRL4
HannXRQ_Chr13g0402661
38
LLPS-Hea-2007
HannXRQ_Chr13g0412271
A0A251SU61
HannXRQ_Chr13g0412271
39
LLPS-Hea-1759
HannXRQ_Chr14g0445931
A0A251SI01
HannXRQ_Chr14g0445931
40
LLPS-Hea-1099
HannXRQ_Chr14g0454021
A0A251SLP9
HannXRQ_Chr14g0454021
41
LLPS-Hea-2668
HannXRQ_Chr16g0502641
A0A251RW78
HannXRQ_Chr16g0502641
42
LLPS-Hea-0290
HannXRQ_Chr16g0532401
A0A251S4K0
HannXRQ_Chr16g0532401
43
LLPS-Hea-1017
HannXRQ_Chr17g0533721
A0A251RM57
HannXRQ_Chr17g0533721
44
LLPS-Hea-0889
HannXRQ_Chr17g0538361
A0A251RM53
HannXRQ_Chr17g0538361
45
LLPS-Hea-2260
HannXRQ_Chr17g0549361
A0A251RP80
HannXRQ_Chr17g0549361
46
LLPS-Hea-0682
HannXRQ_Chr01g0022981
A0A251VQJ2
MAC3A
47
LLPS-Hea-2187
HannXRQ_Chr03g0090991
A0A251VD28
MOS4
48
LLPS-Hea-0835
HannXRQ_Chr05g0148721
A0A251UQZ9
OGG1
49
LLPS-Hea-0014
HannXRQ_Chr17g0561551
A0A251RT01
PRL1
50
LLPS-Hea-2161
HannXRQ_Chr01g0009541
A0A251VM11
PSA3
51
LLPS-Hea-0855
HannXRQ_Chr11g0353631
A0A251TFV1
RH15
52
LLPS-Hea-1056
HannXRQ_Chr05g0154501
A0A251UTI5
RU2A
53
LLPS-Hea-1145
HannXRQ_Chr04g0097891
A0A251UV35
SUS2
54
LLPS-Hea-1707
HannXRQ_Chr07g0192831
A0A251UAQ3
U1-70K
55
LLPS-Hea-0548
HannXRQ_Chr04g0114141
A0A251UZA1
U1A
56
LLPS-Hea-0496
HannXRQ_Chr08g0228511
A0A251U6F2
U2B''
57
LLPS-Hea-0778
HannXRQ_Chr04g0105261
A0A251UXY8
XPO1
58
LLPS-Hea-0459
HannXRQ_Chr16g0512161
A0A251RYN3
YAK1