Gossypium raimondii      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 59 genes.  Reviewed (0 or Unreviewed (59

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Gor-0075
B456_001G038800
A0A0D2QIR2
B456_001G038800
2
LLPS-Gor-1467
B456_001G108500
A0A0D2N827
B456_001G108500
3
LLPS-Gor-1045
B456_001G124100
A0A0D2QPK2
B456_001G124100
4
LLPS-Gor-0730
B456_001G214900
A0A0D2Q2E2
B456_001G214900
5
LLPS-Gor-0363
B456_002G001300
A0A0D2NG33
B456_002G001300
6
LLPS-Gor-1131
B456_002G036200
A0A0D2R057
B456_002G036200
7
LLPS-Gor-0181
B456_002G200100
A0A0D2MDD8
B456_002G200100
8
LLPS-Gor-0969
B456_003G040800
A0A0D2QD31
B456_003G040800
9
LLPS-Gor-0865
B456_003G150900
A0A0D2MP29
B456_003G150900
10
LLPS-Gor-1147
B456_004G205800
A0A0D2R148
B456_004G205800
11
LLPS-Gor-0751
B456_004G217800
A0A0D2R1Z3
B456_004G217800
12
LLPS-Gor-1138
B456_004G258900
A0A0D2RAV9
B456_004G258900
13
LLPS-Gor-1583
B456_005G053600
A0A0D2SBD7
B456_005G053600
14
LLPS-Gor-0471
B456_005G060900
A0A0D2SBM4
B456_005G060900
15
LLPS-Gor-0830
B456_005G150700
A0A0D2PTG6
B456_005G150700
16
LLPS-Gor-2062
B456_005G183600
A0A0D2SJB1
B456_005G183600
17
LLPS-Gor-1641
B456_006G076700
A0A0D2RYS1
B456_006G076700
18
LLPS-Gor-0250
B456_006G122000
A0A0D2S1W7
B456_006G122000
19
LLPS-Gor-0970
B456_006G161000
A0A0D2S491
B456_006G161000
20
LLPS-Gor-1934
B456_006G186300
A0A0D2T0H5
B456_006G186300
21
LLPS-Gor-0740
B456_006G193300
A0A0D2S651
B456_006G193300
22
LLPS-Gor-0365
B456_006G201100
A0A0D2S6M5
B456_006G201100
23
LLPS-Gor-1995
B456_006G262700
A0A0D2QH83
B456_006G262700
24
LLPS-Gor-0540
B456_006G274400
A0A0D2T5D1
B456_006G274400
25
LLPS-Gor-2424
B456_007G118800
A0A0D2TDL3
B456_007G118800
26
LLPS-Gor-0677
B456_007G128300
A0A0D2QRP2
B456_007G128300
27
LLPS-Gor-0503
B456_007G170000
A0A0D2SEZ3
B456_007G170000
28
LLPS-Gor-0982
B456_007G308500
A0A0D2STU8
B456_007G308500
29
LLPS-Gor-0155
B456_008G016300
A0A0D2SYJ8
B456_008G016300
30
LLPS-Gor-0390
B456_008G037900
A0A0D2TTR6
B456_008G037900
31
LLPS-Gor-0700
B456_008G054500
A0A0D2PPE2
B456_008G054500
32
LLPS-Gor-1178
B456_008G144600
A0A0D2T0E9
B456_008G144600
33
LLPS-Gor-2341
B456_008G243900
A0A0D2U917
B456_008G243900
34
LLPS-Gor-0803
B456_008G294100
A0A0D2RPM0
B456_008G294100
35
LLPS-Gor-0035
B456_009G092500
A0A0D2QC83
B456_009G092500
36
LLPS-Gor-0294
B456_009G127700
A0A0D2TIS8
B456_009G127700
37
LLPS-Gor-0821
B456_009G248000
A0A0D2TR00
B456_009G248000
38
LLPS-Gor-2306
B456_009G423700
A0A0D2SHG3
B456_009G423700
39
LLPS-Gor-0025
B456_010G119500
A0A0D2UAM8
B456_010G119500
40
LLPS-Gor-0605
B456_010G1391002
A0A0D2QZ82
B456_010G1391002
41
LLPS-Gor-0052
B456_010G143200
A0A0D2VAF2
B456_010G143200
42
LLPS-Gor-0924
B456_010G201600
A0A0D2SW68
B456_010G201600
43
LLPS-Gor-1490
B456_010G210300
A0A0D2UIC9
B456_010G210300
44
LLPS-Gor-0549
B456_010G245400
A0A0D2UIE4
B456_010G245400
45
LLPS-Gor-1287
B456_011G004100
A0A0D2T061
B456_011G004100
46
LLPS-Gor-0456
B456_011G021100
A0A0D2T100
B456_011G021100
47
LLPS-Gor-0914
B456_011G082500
A0A0D2RIT1
B456_011G082500
48
LLPS-Gor-1470
B456_011G101900
A0A0D2RK37
B456_011G101900
49
LLPS-Gor-2519
B456_011G106100
A0A0D2UR54
B456_011G106100
50
LLPS-Gor-0401
B456_011G122500
A0A0D2USZ5
B456_011G122500
51
LLPS-Gor-1663
B456_011G183900
A0A0D2UVH9
B456_011G183900
52
LLPS-Gor-2213
B456_011G261800
A0A0D2TDX4
B456_011G261800
53
LLPS-Gor-1274
B456_012G005600
A0A0D2VTV7
B456_012G005600
54
LLPS-Gor-0635
B456_012G039600
A0A0D2V1F7
B456_012G039600
55
LLPS-Gor-0159
B456_013G061300
A0A0D2VB82
B456_013G061300
56
LLPS-Gor-0001
B456_013G187200
A0A0D2SGG7
B456_013G187200
57
LLPS-Gor-2158
B456_013G205700
A0A0D2U4I2
B456_013G205700
58
LLPS-Gor-1388
B456_013G256300
A0A0D2W9H2
B456_013G256300
59
LLPS-Gor-0280
B456_013G262700
A0A0D2VKH1
B456_013G262700