Gallus gallus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 98 genes.  Reviewed (0 or Unreviewed (98

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Gaga-0068
ENSGALG00000052748.1
2
LLPS-Gaga-0108
ENSGALG00000016704.6
E1C6A9
3
LLPS-Gaga-0292
ENSGALG00000009699.6
F1NYN3
4
LLPS-Gaga-0326
ENSGALG00000030351.2
A0A1D5PR95
5
LLPS-Gaga-0346
ENSGALG00000007937.5
6
LLPS-Gaga-0547
ENSGALG00000030342.2
7
LLPS-Gaga-0565
ENSGALG00000002612.6
8
LLPS-Gaga-0599
ENSGALG00000031813.2
9
LLPS-Gaga-0614
ENSGALG00000050314.1
10
LLPS-Gaga-0706
ENSGALG00000002514.6
11
LLPS-Gaga-0971
ENSGALG00000052976.1
12
LLPS-Gaga-1237
ENSGALG00000001540.5
13
LLPS-Gaga-1272
ENSGALG00000006404.6
E1BSC0
14
LLPS-Gaga-1813
ENSGALG00000033126.3
A0A1D5PPX8
15
LLPS-Gaga-1884
ENSGALG00000031298.3
16
LLPS-Gaga-1905
ENSGALG00000036530.2
17
LLPS-Gaga-1922
ENSGALG00000012792.6
F1P4G3
18
LLPS-Gaga-1953
ENSGALG00000052354.1
A0A1D5PKV8
19
LLPS-Gaga-2040
ENSGALG00000045555.2
20
LLPS-Gaga-2224
ENSGALG00000011570.7
21
LLPS-Gaga-2271
ENSGALG00000003720.6
F1NP22
22
LLPS-Gaga-2525
ENSGALG00000047953.1
23
LLPS-Gaga-2593
ENSGALG00000051280.1
24
LLPS-Gaga-2935
ENSGALG00000009257.7
25
LLPS-Gaga-3039
ENSGALG00000006242.7
F1NWW9
26
LLPS-Gaga-3047
ENSGALG00000009081.7
E1BRP5
27
LLPS-Gaga-3150
ENSGALG00000051206.1
28
LLPS-Gaga-3182
ENSGALG00000009573.5
F1P2N4
29
LLPS-Gaga-3205
ENSGALG00000032219.2
A0A1D5PPI6
30
LLPS-Gaga-3746
ENSGALG00000009839.6
E1C591
31
LLPS-Gaga-3956
ENSGALG00000012155.6
A0A1D5NX79
32
LLPS-Gaga-1791
ENSGALG00000040957.2
A0A1D5NTU6
AGO2
33
LLPS-Gaga-3945
ENSGALG00000016686.5
F1NFG4
AKAP17A
34
LLPS-Gaga-1318
ENSGALG00000007237.7
E1C2L5
ALYREF
35
LLPS-Gaga-1786
ENSGALG00000003770.8
P17785
ANXA2
36
LLPS-Gaga-0589
ENSGALG00000003682.7
F1NPS9
ARL6IP4
37
LLPS-Gaga-3050
ENSGALG00000002663.6
F1NGW1
ATR
38
LLPS-Gaga-1043
ENSGALG00000002002.6
E1BTS4
BCAS2
39
LLPS-Gaga-1138
ENSGALG00000004152.6
F1P4D4
C17H9orf78
40
LLPS-Gaga-0495
ENSGALG00000003085.7
F1NBD7
CDK1
41
LLPS-Gaga-2126
ENSGALG00000014790.7
E1C8L2
CDK7
42
LLPS-Gaga-0321
ENSGALG00000035576.2
Q5ZKN1
CDK9
43
LLPS-Gaga-1137
ENSGALG00000016529.6
E1BTX0
CDKL5
44
LLPS-Gaga-1433
ENSGALG00000033179.3
Q06900
ChALK5
45
LLPS-Gaga-2717
ENSGALG00000001364.6
P67962
CSNK1A1
46
LLPS-Gaga-2342
ENSGALG00000006817.7
E1BW50
CTNNBL1
47
LLPS-Gaga-2067
ENSGALG00000036432.2
A0A1D5PE14
DNAJC17
48
LLPS-Gaga-3370
ENSGALG00000000863.7
F1ND56
DYRK3
49
LLPS-Gaga-1059
ENSGALG00000017384.6
F1NHW3
ERH
50
LLPS-Gaga-0198
ENSGALG00000017202.6
F1NYM6
FAM76B
51
LLPS-Gaga-3515
ENSGALG00000033118.3
A0A1D5PUM9
FAM83H
52
LLPS-Gaga-3442
ENSGALG00000006658.5
F1P1Z1
FANCI
53
LLPS-Gaga-1854
ENSGALG00000004611.5
Q5F3Z8
FBXL18
54
LLPS-Gaga-2822
ENSGALG00000039786.2
P21804
FGFR1
55
LLPS-Gaga-1896
ENSGALG00000007581.6
Q5ZJ20
FYTTD1
56
LLPS-Gaga-0462
ENSGALG00000040266.2
A0A1D5P775
GLI3
57
LLPS-Gaga-0478
ENSGALG00000014977.6
F1NPL8
GSK3A
58
LLPS-Gaga-0901
ENSGALG00000011870.5
F1NJK2
HIF1A
59
LLPS-Gaga-1446
ENSGALG00000011036.6
Q5ZME1
HNRNPA2B1
60
LLPS-Gaga-2150
ENSGALG00000040086.3
A0A1D5PXG0
HNRNPK
61
LLPS-Gaga-0497
ENSGALG00000017077.6
E1BT08
HSPH1
62
LLPS-Gaga-1383
ENSGALG00000003584.4
A0A1L1RX89
KPNA2
63
LLPS-Gaga-0444
ENSGALG00000036238.2
A0A1D5PE09
LUC7L
64
LLPS-Gaga-1797
ENSGALG00000037983.2
A0A1D5P8J3
LUC7L
65
LLPS-Gaga-2715
ENSGALG00000005507.4
Q5ZIZ5
NONO
66
LLPS-Gaga-1806
ENSGALG00000001080.3
E1BXV1
NR5A1
67
LLPS-Gaga-2781
ENSGALG00000004186.7
F1P283
NSRP1
68
LLPS-Gaga-1789
ENSGALG00000036616.2
A0A1D5P8E1
NUAK2
69
LLPS-Gaga-2291
ENSGALG00000010167.6
E1C2F2
PNN
70
LLPS-Gaga-0238
ENSGALG00000002943.6
E1BZT5
PRPF8
71
LLPS-Gaga-1561
ENSGALG00000012039.4
Q5ZLI2
PSMA3
72
LLPS-Gaga-0529
ENSGALG00000017142.7
Q5ZK88
PSPC1
73
LLPS-Gaga-1064
ENSGALG00000001962.7
A0A1L1S0D8
PTBP1
74
LLPS-Gaga-3606
ENSGALG00000003712.6
E1BS61
RAPGEF1
75
LLPS-Gaga-1250
ENSGALG00000006332.6
E1BUJ1
RBM17
76
LLPS-Gaga-1183
ENSGALG00000029444.3
Q5ZJ82
RCJMB04_20c6
77
LLPS-Gaga-1020
ENSGALG00000011305.6
Q5ZJ42
RCJMB04_20o8
78
LLPS-Gaga-2604
ENSGALG00000004500.6
F1NQ64
RFWD2
79
LLPS-Gaga-0962
ENSGALG00000009288.7
E1BV45
RNPS1
80
LLPS-Gaga-1980
ENSGALG00000021679.5
Q66VY4
SF3A2
81
LLPS-Gaga-0440
ENSGALG00000008038.6
E1C2C3
SF3B1
82
LLPS-Gaga-1930
ENSGALG00000035701.2
P84023
SMAD3
83
LLPS-Gaga-3753
ENSGALG00000003318.5
F1NJ85
SNRNP35
84
LLPS-Gaga-0668
ENSGALG00000007170.6
F1NAC8
SNRPA1
85
LLPS-Gaga-3929
ENSGALG00000009939.6
E1C049
SPOP
86
LLPS-Gaga-0383
ENSGALG00000001283.7
Q5ZMJ9
SRRM1
87
LLPS-Gaga-0188
ENSGALG00000004133.6
Q5ZMR4
SRSF10
88
LLPS-Gaga-0161
ENSGALG00000017357.6
P30352
SRSF2
89
LLPS-Gaga-2125
ENSGALG00000000533.6
E1C8Y9
SRSF3
90
LLPS-Gaga-0831
ENSGALG00000038528.2
A0A1D5PX32
SRSF7L
91
LLPS-Gaga-1090
ENSGALG00000003267.7
Q6DV79
STAT3
92
LLPS-Gaga-0078
ENSGALG00000008435.5
Q8QGH2
SUMO1
93
LLPS-Gaga-0406
ENSGALG00000006531.6
Q9DDU8
TRA2B
94
LLPS-Gaga-3346
ENSGALG00000008889.5
Q5ZI98
TTC14
95
LLPS-Gaga-1134
ENSGALG00000029476.2
A0A1D5P8H7
XPO1
96
LLPS-Gaga-1066
ENSGALG00000035906.3
A0A1D5PEE5
YTHDC1
97
LLPS-Gaga-2987
ENSGALG00000000541.6
F1NLA7
ZC3H11A
98
LLPS-Gaga-1287
ENSGALG00000014859.6
E1C6B5
ZNF131