Fusarium oxysporum      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 29 genes.  Reviewed (0 or Unreviewed (29

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Fuo-0329
FOXG_03117
A0A0D2XGS3
2
LLPS-Fuo-0505
FOXG_01758
A0A0D2XCY3
3
LLPS-Fuo-0626
FOXG_06071
A0A0D2XQ31
4
LLPS-Fuo-0721
FOXG_00508
A0A0D2X9E7
5
LLPS-Fuo-0914
FOXG_01483
A0A0D2XC60
6
LLPS-Fuo-0926
FOXG_07543
A0A0D2XU91
7
LLPS-Fuo-0984
FOXG_04419
A0A0D2XKE5
8
LLPS-Fuo-1092
FOXG_03340
A0A0D2XHE2
9
LLPS-Fuo-1021
FOXG_00047
A0A0D2X841
FOXG_00047
10
LLPS-Fuo-0365
FOXG_00202
A0A0D2X8J3
FOXG_00202
11
LLPS-Fuo-0077
FOXG_00294
A0A0D2X8T5
FOXG_00294
12
LLPS-Fuo-0641
FOXG_00491
A0A0D2X9D0
FOXG_00491
13
LLPS-Fuo-0269
FOXG_01575
A0A0D2XCF2
FOXG_01575
14
LLPS-Fuo-0180
FOXG_01757
A0A0D2XCY2
FOXG_01757
15
LLPS-Fuo-0328
FOXG_01759
A0A0D2XCY4
FOXG_01759
16
LLPS-Fuo-1393
FOXG_02170
A0A0D2XE39
FOXG_02170
17
LLPS-Fuo-1273
FOXG_02231
A0A0D2XE99
FOXG_02231
18
LLPS-Fuo-0906
FOXG_03666
A0A0D2XIB3
FOXG_03666
19
LLPS-Fuo-0684
FOXG_04224
A0A0D2XJV8
FOXG_04224
20
LLPS-Fuo-0582
FOXG_05189
A0A0D2XML2
FOXG_05189
21
LLPS-Fuo-0386
FOXG_05320
A0A0D2XMZ1
FOXG_05320
22
LLPS-Fuo-1322
FOXG_05518
A0A0D2XNI8
FOXG_05518
23
LLPS-Fuo-0736
FOXG_06372
A0A0D2XQX2
FOXG_06372
24
LLPS-Fuo-0627
FOXG_08250
A0A0D2XW86
FOXG_08250
25
LLPS-Fuo-0223
FOXG_09511
A0A0D2XZS9
FOXG_09511
26
LLPS-Fuo-0416
FOXG_10343
A0A0D2Y249
FOXG_10343
27
LLPS-Fuo-0463
FOXG_10564
A0A0D2Y2R5
FOXG_10564
28
LLPS-Fuo-0004
FOXG_10641
A0A0D2Y2Z0
FOXG_10641
29
LLPS-Fuo-0487
FOXG_12830
A0A0D2Y960
FOXG_12830