Felis catus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 118 genes.  Reviewed (0 or Unreviewed (118

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Fec-0086
ENSFCAG00000034671.2
M3X4V1
2
LLPS-Fec-0419
ENSFCAG00000011739.4
M3WFN8
3
LLPS-Fec-1215
ENSFCAG00000002782.5
A0A2I2UKJ7
AGO2
4
LLPS-Fec-3846
ENSFCAG00000044606.1
A0A337SC94
AKAP17A
5
LLPS-Fec-2360
ENSFCAG00000022549.3
A0A2I2U9S3
ALYREF
6
LLPS-Fec-0058
ENSFCAG00000005123.5
M3W3I3
ANXA10
7
LLPS-Fec-1966
ENSFCAG00000007862.5
A0A337SCD2
ANXA2
8
LLPS-Fec-2704
ENSFCAG00000006132.5
M3W5C6
ARL6IP4
9
LLPS-Fec-1666
ENSFCAG00000018078.4
M3WP01
ATR
10
LLPS-Fec-3571
ENSFCAG00000010507.5
M3WDE2
BCAS2
11
LLPS-Fec-4658
ENSFCAG00000004761.5
M3W2T1
C9orf78
12
LLPS-Fec-0646
ENSFCAG00000004893.5
M3W318
CARM1
13
LLPS-Fec-4388
ENSFCAG00000014998.5
M3WLR6
CASC3
14
LLPS-Fec-0675
ENSFCAG00000005138.5
M3W3J7
CCNL1
15
LLPS-Fec-0354
ENSFCAG00000009570.5
M3WBP2
CDC5L
16
LLPS-Fec-2414
ENSFCAG00000014972.5
M3WLP7
CDK1
17
LLPS-Fec-1797
ENSFCAG00000004827.5
M3W2X7
CDK7
18
LLPS-Fec-2147
ENSFCAG00000038659.2
A0A2I2U8H4
CDK9
19
LLPS-Fec-2902
ENSFCAG00000001075.5
M3VVZ0
CDKL5
20
LLPS-Fec-0041
ENSFCAG00000045726.1
A0A2I2UHV8
CLK2
21
LLPS-Fec-0912
ENSFCAG00000014440.5
A0A337SWG1
COP1
22
LLPS-Fec-2106
ENSFCAG00000031849.3
A0A337RTE5
CSNK1A1
23
LLPS-Fec-2457
ENSFCAG00000015429.5
A0A337SWB3
CTNNBL1
24
LLPS-Fec-0254
ENSFCAG00000004497.4
A0A2I2U6G2
DDX39B
25
LLPS-Fec-3288
ENSFCAG00000026229.3
A0A2I2U5L8
DDX46
26
LLPS-Fec-1983
ENSFCAG00000006801.5
M3W6I7
DGCR8
27
LLPS-Fec-1287
ENSFCAG00000033551.2
A0A2I2U0B3
DNAJB1
28
LLPS-Fec-1872
ENSFCAG00000041783.1
M3XBF3
DNAJC17
29
LLPS-Fec-4306
ENSFCAG00000025106.3
M3XF30
DYRK3
30
LLPS-Fec-4447
ENSFCAG00000000506.5
M3VUW6
EGF
31
LLPS-Fec-0982
ENSFCAG00000008873.5
M3WAD9
ERH
32
LLPS-Fec-0072
ENSFCAG00000013131.5
A0A337S5N7
EZH1
33
LLPS-Fec-0011
ENSFCAG00000026051.3
A0A2I2UWR7
FAM76B
34
LLPS-Fec-4129
ENSFCAG00000025159.3
M3WQT5
FAM83H
35
LLPS-Fec-0736
ENSFCAG00000011228.5
M3WEP9
FANCD2
36
LLPS-Fec-3625
ENSFCAG00000012886.5
M3WHT5
FANCI
37
LLPS-Fec-0671
ENSFCAG00000007266.5
M3W7E6
FBXL18
38
LLPS-Fec-1624
ENSFCAG00000001443.5
A0A2I2UKQ7
FRMD8
39
LLPS-Fec-0327
ENSFCAG00000027928.3
M3X5Q2
FUS
40
LLPS-Fec-4761
ENSFCAG00000009992.5
M3WCI2
FYTTD1
41
LLPS-Fec-3641
ENSFCAG00000011989.5
M3WG49
GLI3
42
LLPS-Fec-1361
ENSFCAG00000040420.1
M3XCY3
GSK3B
43
LLPS-Fec-1952
ENSFCAG00000003427.5
M3W0C0
HIF1A
44
LLPS-Fec-2576
ENSFCAG00000014181.5
M3WK84
HIF3A
45
LLPS-Fec-1525
ENSFCAG00000010565.5
A0A2I2U2V6
HIPK2
46
LLPS-Fec-1081
ENSFCAG00000010150.4
M3X7W8
HNRNPA1
47
LLPS-Fec-1405
ENSFCAG00000027765.3
M3XCQ1
HNRNPA2B1
48
LLPS-Fec-1129
ENSFCAG00000014862.5
M3WLH7
HNRNPK
49
LLPS-Fec-3390
ENSFCAG00000007547.5
M3W7W7
HSPH1
50
LLPS-Fec-1127
ENSFCAG00000008171.5
A0A337RWC2
ILF2
51
LLPS-Fec-2934
ENSFCAG00000004887.5
M3W314
ILF3
52
LLPS-Fec-4155
ENSFCAG00000011288.5
M3WEU4
IVNS1ABP
53
LLPS-Fec-2001
ENSFCAG00000001936.4
M3VXK5
KPNA2
54
LLPS-Fec-0298
ENSFCAG00000042456.1
M3WC96
LOC101083591
55
LLPS-Fec-2039
ENSFCAG00000034011.2
A0A2I2U7S9
LUC7L
56
LLPS-Fec-3212
ENSFCAG00000025232.3
M3X9V4
MAGOH
57
LLPS-Fec-3841
ENSFCAG00000028316.3
M3WZW7
NAGK
58
LLPS-Fec-0219
ENSFCAG00000043511.1
M3WLD5
NONO
59
LLPS-Fec-0639
ENSFCAG00000010497.4
M3WDD5
NOSIP
60
LLPS-Fec-4802
ENSFCAG00000022552.3
M3WZ16
NR5A1
61
LLPS-Fec-4725
ENSFCAG00000039697.2
A0A2I2V4B9
NSRP1
62
LLPS-Fec-1837
ENSFCAG00000043568.1
A0A337SX41
NUAK2
63
LLPS-Fec-2544
ENSFCAG00000014774.4
M3WLB4
NXF1
64
LLPS-Fec-1474
ENSFCAG00000014192.4
M3WK92
OGG1
65
LLPS-Fec-1207
ENSFCAG00000011040.5
M3WZQ4
P2RY12
66
LLPS-Fec-0608
ENSFCAG00000031922.3
M3XDX6
PABPN1
67
LLPS-Fec-0598
ENSFCAG00000022238.3
M3WS36
PCBP1
68
LLPS-Fec-0826
ENSFCAG00000031848.3
M3WPW2
PLRG1
69
LLPS-Fec-2981
ENSFCAG00000030565.3
M3X9E7
PNN
70
LLPS-Fec-1936
ENSFCAG00000043864.1
A0A337SNK9
PPIG
71
LLPS-Fec-0447
ENSFCAG00000013668.5
M3WJ97
PRPF19
72
LLPS-Fec-1671
ENSFCAG00000006297.5
M3W5M8
PRPF8
73
LLPS-Fec-3203
ENSFCAG00000025134.3
A0A337SD26
PSMA3
74
LLPS-Fec-1270
ENSFCAG00000027841.3
M3X0A4
PSPC1
75
LLPS-Fec-0790
ENSFCAG00000001219.5
M3VW82
PTBP1
76
LLPS-Fec-0781
ENSFCAG00000007100.5
A0A2I2V0J1
RAPGEF1
77
LLPS-Fec-2913
ENSFCAG00000031988.3
M3XE89
RBM17
78
LLPS-Fec-0070
ENSFCAG00000006632.5
M3W687
RBM23
79
LLPS-Fec-0925
ENSFCAG00000044242.1
A0A337SNY2
RBMX2
80
LLPS-Fec-2638
ENSFCAG00000007690.5
A0A337SJJ9
RNPS1
81
LLPS-Fec-3829
ENSFCAG00000037076.2
A0A2I2UIT2
SARNP
82
LLPS-Fec-1507
ENSFCAG00000012231.5
A0A2I2U8V5
SF1
83
LLPS-Fec-0833
ENSFCAG00000011932.4
M3WG15
SF3A1
84
LLPS-Fec-3430
ENSFCAG00000030476.3
M3X4F3
SF3A2
85
LLPS-Fec-0535
ENSFCAG00000027772.3
M3XB41
SF3A3
86
LLPS-Fec-2930
ENSFCAG00000005038.5
A0A2I2UZX4
SF3B1
87
LLPS-Fec-0149
ENSFCAG00000042862.1
A0A337SJM7
SFPQ
88
LLPS-Fec-2896
ENSFCAG00000027081.3
A0A2I2UP85
SMAD3
89
LLPS-Fec-1349
ENSFCAG00000010699.5
A0A2I2UID1
SNRNP200
90
LLPS-Fec-3461
ENSFCAG00000001159.5
M3VW33
SNRNP35
91
LLPS-Fec-2248
ENSFCAG00000042603.1
A0A337S6L0
SNRNP70
92
LLPS-Fec-0946
ENSFCAG00000016209.5
M3WNA8
SNRPA
93
LLPS-Fec-0324
ENSFCAG00000018594.4
M3WNG7
SNRPA1
94
LLPS-Fec-2204
ENSFCAG00000026115.3
M3WSH0
SNRPB2
95
LLPS-Fec-3293
ENSFCAG00000028680.3
A0A2I2U5W4
SON
96
LLPS-Fec-4766
ENSFCAG00000002637.4
M3VYV6
SPOP
97
LLPS-Fec-0123
ENSFCAG00000004709.5
A0A2I2UFB9
SRRM2
98
LLPS-Fec-1311
ENSFCAG00000002250.5
M3VY56
SRSF1
99
LLPS-Fec-2805
ENSFCAG00000045556.1
A0A337SHS5
SRSF10
100
LLPS-Fec-1323
ENSFCAG00000012448.5
M3WGY9
SRSF11
101
LLPS-Fec-1754
ENSFCAG00000043466.1
A0A337SID0
SRSF2
102
LLPS-Fec-0053
ENSFCAG00000001084.4
M3VVZ2
SRSF3
103
LLPS-Fec-1096
ENSFCAG00000027821.3
M3X8K9
SRSF4
104
LLPS-Fec-1714
ENSFCAG00000031143.3
M3WYE6
SRSF7
105
LLPS-Fec-0985
ENSFCAG00000011011.5
M3WEB9
SRSF9
106
LLPS-Fec-3339
ENSFCAG00000002154.5
M3VY01
STAT3
107
LLPS-Fec-1846
ENSFCAG00000031005.3
A0A337SP28
SUMO1
108
LLPS-Fec-1946
ENSFCAG00000027261.3
A0A337SV88
TGFBR1
109
LLPS-Fec-2126
ENSFCAG00000010526.5
M3WDF5
TRA2B
110
LLPS-Fec-3251
ENSFCAG00000027763.3
M3XCC9
TTC14
111
LLPS-Fec-1038
ENSFCAG00000011504.5
M3WF80
U2AF2
112
LLPS-Fec-3428
ENSFCAG00000012186.5
M3WGH5
U2SURP
113
LLPS-Fec-0024
ENSFCAG00000002702.5
M3VYZ8
XPO1
114
LLPS-Fec-1512
ENSFCAG00000026791.3
A0A2I2U960
YTHDC1
115
LLPS-Fec-0080
ENSFCAG00000000872.5
M3VVK2
ZC3H11A
116
LLPS-Fec-2819
ENSFCAG00000002899.5
A0A337SAV6
ZNF106
117
LLPS-Fec-1355
ENSFCAG00000029728.3
A0A2I2ULP9
ZNF131
118
LLPS-Fec-1219
ENSFCAG00000009801.4
A0A2I2U080
ZNF688