Cucumis sativus      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 52 genes.  Reviewed (0 or Unreviewed (52

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Cus-1201
Csa_1G024870
A0A0A0LPN4
Csa_1G024870
2
LLPS-Cus-0813
Csa_1G025140
A0A0A0LPZ3
Csa_1G025140
3
LLPS-Cus-1293
Csa_1G025950
A0A0A0LPT7
Csa_1G025950
4
LLPS-Cus-1234
Csa_1G042680
A0A0A0LQG2
Csa_1G042680
5
LLPS-Cus-0444
Csa_1G524700
A0A0A0LVE0
Csa_1G524700
6
LLPS-Cus-2078
Csa_1G600230
A0A0A0LX79
Csa_1G600230
7
LLPS-Cus-2044
Csa_1G630290
A0A0A0LZX6
Csa_1G630290
8
LLPS-Cus-1142
Csa_2G070270
A0A0A0LJE9
Csa_2G070270
9
LLPS-Cus-2247
Csa_2G279200
A0A0A0LJN3
Csa_2G279200
10
LLPS-Cus-0384
Csa_2G324460
A0A0A0LQB5
Csa_2G324460
11
LLPS-Cus-1306
Csa_2G345920
A0A0A0LQG4
Csa_2G345920
12
LLPS-Cus-0534
Csa_2G379180
A0A0A0LQ00
Csa_2G379180
13
LLPS-Cus-1996
Csa_2G382720
A0A0A0LPU7
Csa_2G382720
14
LLPS-Cus-1400
Csa_2G382730
A0A0A0LM94
Csa_2G382730
15
LLPS-Cus-1580
Csa_2G404860
A0A0A0LMI9
Csa_2G404860
16
LLPS-Cus-0095
Csa_3G043910
A0A0A0L1Z2
Csa_3G043910
17
LLPS-Cus-0488
Csa_3G134680
A0A0A0L6Z6
Csa_3G134680
18
LLPS-Cus-1412
Csa_3G209450
A0A0A0L734
Csa_3G209450
19
LLPS-Cus-1057
Csa_3G302100
A0A0A0L717
Csa_3G302100
20
LLPS-Cus-0187
Csa_3G603040
A0A0A0LDU3
Csa_3G603040
21
LLPS-Cus-1581
Csa_3G734970
A0A0A0LDS4
Csa_3G734970
22
LLPS-Cus-0793
Csa_3G817750
A0A0A0LBL5
Csa_3G817750
23
LLPS-Cus-0334
Csa_3G824830
A0A0A0LCQ7
Csa_3G824830
24
LLPS-Cus-0107
Csa_3G838640
A0A0A0LCE4
Csa_3G838640
25
LLPS-Cus-1765
Csa_4G001840
A0A0A0KWK4
Csa_4G001840
26
LLPS-Cus-0993
Csa_4G022880
A0A0A0KXK7
Csa_4G022880
27
LLPS-Cus-0111
Csa_4G062910
A0A0A0L083
Csa_4G062910
28
LLPS-Cus-0855
Csa_4G106350
A0A0A0L0N2
Csa_4G106350
29
LLPS-Cus-0968
Csa_4G110070
A0A0A0KVS0
Csa_4G110070
30
LLPS-Cus-1550
Csa_4G308540
A0A0A0KZW7
Csa_4G308540
31
LLPS-Cus-2156
Csa_4G594470
A0A0A0KZL1
Csa_4G594470
32
LLPS-Cus-1443
Csa_4G607050
A0A0A0KZM9
Csa_4G607050
33
LLPS-Cus-0691
Csa_5G129300
A0A0A0KLP5
Csa_5G129300
34
LLPS-Cus-1034
Csa_5G177110
A0A0A0KS31
Csa_5G177110
35
LLPS-Cus-2350
Csa_5G181460
A0A0A0KNV5
Csa_5G181460
36
LLPS-Cus-0614
Csa_5G429980
A0A0A0KTP8
Csa_5G429980
37
LLPS-Cus-1514
Csa_5G622570
A0A0A0KUW9
Csa_5G622570
38
LLPS-Cus-0415
Csa_6G022350
A0A0A0K920
Csa_6G022350
39
LLPS-Cus-1435
Csa_6G087940
A0A0A0KF19
Csa_6G087940
40
LLPS-Cus-0547
Csa_6G089220
A0A0A0K9F1
Csa_6G089220
41
LLPS-Cus-2090
Csa_6G161200
A0A0A0KBG5
Csa_6G161200
42
LLPS-Cus-0772
Csa_6G194130
A0A0A0KCB9
Csa_6G194130
43
LLPS-Cus-1491
Csa_6G319790
A0A0A0KD37
Csa_6G319790
44
LLPS-Cus-1668
Csa_6G382890
A0A0A0KIU8
Csa_6G382890
45
LLPS-Cus-0149
Csa_6G499790
A0A0A0KG83
Csa_6G499790
46
LLPS-Cus-0469
Csa_6G507340
A0A0A0KMM4
Csa_6G507340
47
LLPS-Cus-0743
Csa_6G525420
A0A0A0KP45
Csa_6G525420
48
LLPS-Cus-1054
Csa_7G014590
A0A0A0K1D3
Csa_7G014590
49
LLPS-Cus-0169
Csa_7G017130
A0A0A0K2M3
Csa_7G017130
50
LLPS-Cus-0574
Csa_7G378580
A0A0A0K777
Csa_7G378580
51
LLPS-Cus-2202
Csa_7G431360
A0A0A0K6R7
Csa_7G431360
52
LLPS-Cus-0837
Csa_7G432440
A0A0A0KA48
Csa_7G432440