Colletotrichum orbiculare      Nuclear speckle


※ Nuclear speckle introduction

    Nuclear speckles or splicing speckles, also known as interchromatin granule clusters, are membrane-less nuclear organelles enriched in pre-mRNA splicing and transcription factors and play important roles in RNA metabolism, such as transcription, pre-mRNA splicing, 3′-end mRNA processing, and execution of mRNA nuclear export (1; 2). They are dynamic subnuclear structures, and their size, shape, and number can vary accompanied with RNA regulation, nuclear speckles disperse in high activity of mRNA processing when transcription or pre-mRNA splicing is inhibited, GSK-3β can regulate assembly of nuclear speckles (2). Because many naturally intronless mRNAs, including eight exogenously expressed and four endogenous ones, are proved to be associate with NSs, So Nuclear speckles (NSs) are thought to serve as splicing factor storage sites (3).

Reference
1. Lee, K. H., Zhang, P., Kim, H. J., Mitrea, D. M., Sarkar, M., Freibaum, B. D., et al. (2016) C9orf72 Dipeptide Repeats Impair the Assembly, Dynamics, and Function of Membrane-Less Organelles. Cell, 167(3), 774-788 e717. PMID: 27768896
2. Wang, K., Wang, L., Wang, J., Chen, S., Shi, M., & Cheng, H. (2018) Intronless mRNAs transit through nuclear speckles to gain export competence. J Cell Biol, 217(11), 3912-3929. PMID: 30194269
3. An, Y., Zou, Y., Cao, Y., Yao, M., Ma, N., Wu, Y., et al. (2019) The nuclear GSK-3beta regulated post-transcriptional processing of mRNA through phosphorylation of SC35. Mol Cell Biochem, 451(1-2), 55-67. PMID: 30030778


There are 29 genes.  Reviewed (0 or Unreviewed (29

No.StatusDrLLPS IDEnsemble Gene IDUniProt AccessionGene Name
1
LLPS-Coo-0546
Cob_02161
N4V605
Cob_02161
2
LLPS-Coo-1311
Cob_02641
N4W780
Cob_02641
3
LLPS-Coo-0988
Cob_02650
N4W3P3
Cob_02650
4
LLPS-Coo-0550
Cob_03254
N4W0Y7
Cob_03254
5
LLPS-Coo-0247
Cob_03407
N4VKE3
Cob_03407
6
LLPS-Coo-0110
Cob_03491
N4W5D9
Cob_03491
7
LLPS-Coo-0811
Cob_03492
N4VXA4
Cob_03492
8
LLPS-Coo-1336
Cob_03555
N4W1V3
Cob_03555
9
LLPS-Coo-0722
Cob_03879
N4VI03
Cob_03879
10
LLPS-Coo-1017
Cob_05488
N4VRX1
Cob_05488
11
LLPS-Coo-1217
Cob_05798
N4VY30
Cob_05798
12
LLPS-Coo-0633
Cob_06213
N4VEI6
Cob_06213
13
LLPS-Coo-0315
Cob_07383
N4VKM4
Cob_07383
14
LLPS-Coo-1241
Cob_07496
N4VPF2
Cob_07496
15
LLPS-Coo-0145
Cob_08057
N4V6M8
Cob_08057
16
LLPS-Coo-0117
Cob_08277
N4V7R9
Cob_08277
17
LLPS-Coo-1372
Cob_08723
N4V2R6
Cob_08723
18
LLPS-Coo-0656
Cob_09185
N4VIL8
Cob_09185
19
LLPS-Coo-0495
Cob_09467
N4VLC3
Cob_09467
20
LLPS-Coo-1147
Cob_09614
N4V1T2
Cob_09614
21
LLPS-Coo-0243
Cob_10331
N4V0B8
Cob_10331
22
LLPS-Coo-0054
Cob_10694
N4VAG4
Cob_10694
23
LLPS-Coo-0297
Cob_11154
N4VBH6
Cob_11154
24
LLPS-Coo-0876
Cob_12003
N4V916
Cob_12003
25
LLPS-Coo-0887
Cob_12049
N4VC93
Cob_12049
26
LLPS-Coo-0013
Cob_12089
N4VCC2
Cob_12089
27
LLPS-Coo-0760
Cob_12239
N4V6W1
Cob_12239
28
LLPS-Coo-1423
Cob_12300
N4VAW2
Cob_12300
29
LLPS-Coo-1020
Cob_13149
N4V9P9
Cob_13149